miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5461 5' -59.5 NC_001798.1 + 53869 0.66 0.802947
Target:  5'- uGGcGCuCAGCGgGagucuggaGGGCCCGCGgaGAc -3'
miRNA:   3'- -CCaUGuGUCGCgC--------CCUGGGCGCgaCU- -5'
5461 5' -59.5 NC_001798.1 + 98532 0.66 0.802082
Target:  5'- -aUGCGCGGgG-GGGGCUugauuugCGCGCUGGu -3'
miRNA:   3'- ccAUGUGUCgCgCCCUGG-------GCGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 154280 0.66 0.794236
Target:  5'- cGUGCGCAGCcCGGG--CCGUGUUGc -3'
miRNA:   3'- cCAUGUGUCGcGCCCugGGCGCGACu -5'
5461 5' -59.5 NC_001798.1 + 153012 0.66 0.794236
Target:  5'- cGGUcGC-CGGgGCGGaguccgGGCCCGCGCg-- -3'
miRNA:   3'- -CCA-UGuGUCgCGCC------CUGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 63722 0.66 0.794236
Target:  5'- uGGUugAUGGUGCGGG-CCacauaggcgcggCGCGcCUGGu -3'
miRNA:   3'- -CCAugUGUCGCGCCCuGG------------GCGC-GACU- -5'
5461 5' -59.5 NC_001798.1 + 58409 0.66 0.785388
Target:  5'- --cGCGCGGCGCaGGcGGCCaGCGCg-- -3'
miRNA:   3'- ccaUGUGUCGCG-CC-CUGGgCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 79387 0.66 0.785388
Target:  5'- cGG-GCGCgGGCGCGGaGuccgcGCCCGCGCc-- -3'
miRNA:   3'- -CCaUGUG-UCGCGCC-C-----UGGGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 16155 0.66 0.785388
Target:  5'- cGGggGCACcgAGCGCcacgGGcGGCCCGCGggGAc -3'
miRNA:   3'- -CCa-UGUG--UCGCG----CC-CUGGGCGCgaCU- -5'
5461 5' -59.5 NC_001798.1 + 53107 0.66 0.785388
Target:  5'- gGGcGCGCGGCGCGaGcucCCUGCgGCUGGc -3'
miRNA:   3'- -CCaUGUGUCGCGC-Ccu-GGGCG-CGACU- -5'
5461 5' -59.5 NC_001798.1 + 102101 0.66 0.785388
Target:  5'- cGUAgGgGGCGUGGGuACgCGCGCg-- -3'
miRNA:   3'- cCAUgUgUCGCGCCC-UGgGCGCGacu -5'
5461 5' -59.5 NC_001798.1 + 21957 0.66 0.77641
Target:  5'- --gGCGgAGCGCGGGAugacgcgggcCCCGgGCa-- -3'
miRNA:   3'- ccaUGUgUCGCGCCCU----------GGGCgCGacu -5'
5461 5' -59.5 NC_001798.1 + 63306 0.66 0.77641
Target:  5'- --gGCcCAGCa-GGcGAUCCGCGCUGAa -3'
miRNA:   3'- ccaUGuGUCGcgCC-CUGGGCGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 65671 0.66 0.77641
Target:  5'- aGGUACACGcacGCcccgGUGGGGCgCGUGCUc- -3'
miRNA:   3'- -CCAUGUGU---CG----CGCCCUGgGCGCGAcu -5'
5461 5' -59.5 NC_001798.1 + 76249 0.66 0.775505
Target:  5'- --aACACA-CGCGGGACgucgcucagcgcgCCGCGCUc- -3'
miRNA:   3'- ccaUGUGUcGCGCCCUG-------------GGCGCGAcu -5'
5461 5' -59.5 NC_001798.1 + 5446 0.66 0.773692
Target:  5'- --aGCGCccGGCGCGGGcggcuuccgcuuccGCCCGCGaugcuaaUGAg -3'
miRNA:   3'- ccaUGUG--UCGCGCCC--------------UGGGCGCg------ACU- -5'
5461 5' -59.5 NC_001798.1 + 31151 0.66 0.767311
Target:  5'- cGGggGCgGCGGUGCGGGggcgACCCGCGg--- -3'
miRNA:   3'- -CCa-UG-UGUCGCGCCC----UGGGCGCgacu -5'
5461 5' -59.5 NC_001798.1 + 27489 0.66 0.767311
Target:  5'- cGGggGCG-GGCGCGGGAaaaaagCCGCGCgGGg -3'
miRNA:   3'- -CCa-UGUgUCGCGCCCUg-----GGCGCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 26336 0.66 0.767311
Target:  5'- gGGgcgcgACGCcguGCGCGGcGGCCCG-GCgGAg -3'
miRNA:   3'- -CCa----UGUGu--CGCGCC-CUGGGCgCGaCU- -5'
5461 5' -59.5 NC_001798.1 + 143101 0.66 0.767311
Target:  5'- uGGUACGCAuGUGCGuugcGGcggugcuccgcGCuuGCGCUGGc -3'
miRNA:   3'- -CCAUGUGU-CGCGC----CC-----------UGggCGCGACU- -5'
5461 5' -59.5 NC_001798.1 + 88247 0.66 0.767311
Target:  5'- uGUACGC-GCGCGGGugUCugcucaguucgGCGgUGAg -3'
miRNA:   3'- cCAUGUGuCGCGCCCugGG-----------CGCgACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.