miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5463 3' -60.4 NC_001798.1 + 57547 0.66 0.7454
Target:  5'- gGCGGaUGCgUUCCgCGgGGACGCGGa-- -3'
miRNA:   3'- gCGCC-GCG-AAGG-GCgCCUGUGCUgaa -5'
5463 3' -60.4 NC_001798.1 + 124131 0.66 0.7454
Target:  5'- uGUGGCGCgccCCCGCcGugGCGGa-- -3'
miRNA:   3'- gCGCCGCGaa-GGGCGcCugUGCUgaa -5'
5463 3' -60.4 NC_001798.1 + 3202 0.66 0.7454
Target:  5'- gGcCGGCGCggag-GCGGGCGCGGCg- -3'
miRNA:   3'- gC-GCCGCGaagggCGCCUGUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 53242 0.66 0.73594
Target:  5'- gCGCGGcCGUgggcgUCCUGCGGcagcGCGcCGACg- -3'
miRNA:   3'- -GCGCC-GCGa----AGGGCGCC----UGU-GCUGaa -5'
5463 3' -60.4 NC_001798.1 + 91804 0.66 0.73594
Target:  5'- gCGCGGgGCguggggaCCGUGGGCGgGGCc- -3'
miRNA:   3'- -GCGCCgCGaag----GGCGCCUGUgCUGaa -5'
5463 3' -60.4 NC_001798.1 + 96350 0.66 0.73594
Target:  5'- uGCGGCGgcaCCUGCGGcCGgGGCUg -3'
miRNA:   3'- gCGCCGCgaaGGGCGCCuGUgCUGAa -5'
5463 3' -60.4 NC_001798.1 + 116508 0.66 0.73594
Target:  5'- uGcCGGC-CUUCUCGCGGGgGCGcuGCUg -3'
miRNA:   3'- gC-GCCGcGAAGGGCGCCUgUGC--UGAa -5'
5463 3' -60.4 NC_001798.1 + 66031 0.66 0.73594
Target:  5'- uGUGGCGCaUgCCGCGGgucGCcCGGCa- -3'
miRNA:   3'- gCGCCGCGaAgGGCGCC---UGuGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 78825 0.66 0.73594
Target:  5'- cCGCGGCGaCggCCC-CGGccccugGCGCGGCa- -3'
miRNA:   3'- -GCGCCGC-GaaGGGcGCC------UGUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 95662 0.66 0.73594
Target:  5'- aCGCGGCGUcgUUCgGCGGuuugGCGGCg- -3'
miRNA:   3'- -GCGCCGCGa-AGGgCGCCug--UGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 135652 0.66 0.73594
Target:  5'- cCGgGGCGUgguucuggaacUCCCGCGauGACACcGACUUc -3'
miRNA:   3'- -GCgCCGCGa----------AGGGCGC--CUGUG-CUGAA- -5'
5463 3' -60.4 NC_001798.1 + 152642 0.66 0.73594
Target:  5'- -cCGGCGC--CCCGCcGGCGCGGCc- -3'
miRNA:   3'- gcGCCGCGaaGGGCGcCUGUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 148012 0.66 0.734989
Target:  5'- uGUGGCGCccgUCCCcuuccucuaccgcGUGGGCGCGGg-- -3'
miRNA:   3'- gCGCCGCGa--AGGG-------------CGCCUGUGCUgaa -5'
5463 3' -60.4 NC_001798.1 + 1199 0.66 0.730223
Target:  5'- cCGCGGCcagcaccguccccgcGCggCCCGCGG-C-CGACg- -3'
miRNA:   3'- -GCGCCG---------------CGaaGGGCGCCuGuGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 2211 0.66 0.726395
Target:  5'- gCGCGGCGCagcgggCCCgaggcgcgcaGCGGGCcgaagGCGGCg- -3'
miRNA:   3'- -GCGCCGCGaa----GGG----------CGCCUG-----UGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 123879 0.66 0.726395
Target:  5'- uCGaCGGCGCcuaccugguaCCCaCGGACACGGCc- -3'
miRNA:   3'- -GC-GCCGCGaa--------GGGcGCCUGUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 54720 0.66 0.716773
Target:  5'- aCGCGGUGCggaCCUGggggcCGGACGCGGa-- -3'
miRNA:   3'- -GCGCCGCGaa-GGGC-----GCCUGUGCUgaa -5'
5463 3' -60.4 NC_001798.1 + 1836 0.66 0.716773
Target:  5'- gGCGG-GCcagUCCGCGGcgcGCACGGCg- -3'
miRNA:   3'- gCGCCgCGaa-GGGCGCC---UGUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 26351 0.66 0.716773
Target:  5'- gCGCGGCGg--CCCgGCGGAgcugcgcgggcCGCGGCg- -3'
miRNA:   3'- -GCGCCGCgaaGGG-CGCCU-----------GUGCUGaa -5'
5463 3' -60.4 NC_001798.1 + 48334 0.66 0.707084
Target:  5'- aCGCGGCGCaggaCGUcGACGCGACc- -3'
miRNA:   3'- -GCGCCGCGaaggGCGcCUGUGCUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.