miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5463 5' -51.8 NC_001798.1 + 145837 0.66 0.991822
Target:  5'- cGGGGUgggaGUGGUg-GUgGGGGACACg -3'
miRNA:   3'- uCUCCAg---UACCAgaUAgCCUCUGUGg -5'
5463 5' -51.8 NC_001798.1 + 36436 0.66 0.991822
Target:  5'- cGGGGUCggGGUCgcggCGGGGAa--- -3'
miRNA:   3'- uCUCCAGuaCCAGaua-GCCUCUgugg -5'
5463 5' -51.8 NC_001798.1 + 16130 0.66 0.990392
Target:  5'- cGGGGUUggGGgcggaauaccaUAcCGGGGGCACCg -3'
miRNA:   3'- uCUCCAGuaCCag---------AUaGCCUCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 132029 0.66 0.989471
Target:  5'- cGGGGcgaaaagaacguucaCGUGGUC-AUCGGGGAguaCGCCa -3'
miRNA:   3'- uCUCCa--------------GUACCAGaUAGCCUCU---GUGG- -5'
5463 5' -51.8 NC_001798.1 + 38184 0.66 0.989334
Target:  5'- uGGGGcCGcUGGUCgagcaGGAGGCGCg -3'
miRNA:   3'- uCUCCaGU-ACCAGauag-CCUCUGUGg -5'
5463 5' -51.8 NC_001798.1 + 52222 0.66 0.989334
Target:  5'- cAGAcGGUCcaguggcucucgGUGGUCg--UGGGGGCGCg -3'
miRNA:   3'- -UCU-CCAG------------UACCAGauaGCCUCUGUGg -5'
5463 5' -51.8 NC_001798.1 + 33383 0.66 0.987887
Target:  5'- uGGGGGUgGUGGgcaggaGUgGGAGgGCGCCu -3'
miRNA:   3'- -UCUCCAgUACCaga---UAgCCUC-UGUGG- -5'
5463 5' -51.8 NC_001798.1 + 9417 0.67 0.982626
Target:  5'- gGGAGaGUCG-GGUCUcucCGGAGGguCCu -3'
miRNA:   3'- -UCUC-CAGUaCCAGAua-GCCUCUguGG- -5'
5463 5' -51.8 NC_001798.1 + 139688 0.67 0.980537
Target:  5'- cGAGGUCcUGGaCUGcgUGGucacGGGCGCCa -3'
miRNA:   3'- uCUCCAGuACCaGAUa-GCC----UCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 153523 0.67 0.978265
Target:  5'- cGGGGGUCGgagggGcGUCaggggGUCGGAGGgGCg -3'
miRNA:   3'- -UCUCCAGUa----C-CAGa----UAGCCUCUgUGg -5'
5463 5' -51.8 NC_001798.1 + 153561 0.67 0.978265
Target:  5'- aGGGGGUCGgagggGcGUCaggggGUCGGAGGgGCg -3'
miRNA:   3'- -UCUCCAGUa----C-CAGa----UAGCCUCUgUGg -5'
5463 5' -51.8 NC_001798.1 + 153599 0.67 0.978265
Target:  5'- aGGGGGUCGgagggGcGUCaggggGUCGGAGGgGCg -3'
miRNA:   3'- -UCUCCAGUa----C-CAGa----UAGCCUCUgUGg -5'
5463 5' -51.8 NC_001798.1 + 27016 0.67 0.975804
Target:  5'- cGGGGGUCGggcgggcgggGGUCgggCGGGcGGCACg -3'
miRNA:   3'- -UCUCCAGUa---------CCAGauaGCCU-CUGUGg -5'
5463 5' -51.8 NC_001798.1 + 43680 0.67 0.975547
Target:  5'- uGGGGUCGUGGgugGUCacggcccGGAGAUGCg -3'
miRNA:   3'- uCUCCAGUACCagaUAG-------CCUCUGUGg -5'
5463 5' -51.8 NC_001798.1 + 62974 0.67 0.973144
Target:  5'- cGGGGUUcUGGUCggcgcuugauuUAUCGGuuGGACGCg -3'
miRNA:   3'- uCUCCAGuACCAG-----------AUAGCC--UCUGUGg -5'
5463 5' -51.8 NC_001798.1 + 78547 0.68 0.967203
Target:  5'- -cGGGUCAUGGcgggcCUGcgGGAGGCGCUg -3'
miRNA:   3'- ucUCCAGUACCa----GAUagCCUCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 11440 0.68 0.963907
Target:  5'- cGGGGUUGUaaaUCUGgccgCGGGGGCGCCu -3'
miRNA:   3'- uCUCCAGUAcc-AGAUa---GCCUCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 110326 0.68 0.963907
Target:  5'- gGGAGGUCAUgucGGUgCUGcUGGuGGACACg -3'
miRNA:   3'- -UCUCCAGUA---CCA-GAUaGCC-UCUGUGg -5'
5463 5' -51.8 NC_001798.1 + 87997 0.68 0.960386
Target:  5'- gGGGGGUCGgcaugcgacgGcGUCUccCGGGGGCGCUu -3'
miRNA:   3'- -UCUCCAGUa---------C-CAGAuaGCCUCUGUGG- -5'
5463 5' -51.8 NC_001798.1 + 25890 0.69 0.948425
Target:  5'- cGAcGGgccCGUGGUCUcgCGGcAGcACGCCu -3'
miRNA:   3'- uCU-CCa--GUACCAGAuaGCC-UC-UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.