miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5464 3' -55.6 NC_001798.1 + 115034 0.66 0.926034
Target:  5'- cGUGCGGagccUGGACGACgugGGcCGCCACCUg -3'
miRNA:   3'- uCGCGCU----GCUUGUUG---UC-GUGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 136135 0.66 0.926034
Target:  5'- aGGCGUGugGGGCGAgGGCgggaGCUuuguguACCCu -3'
miRNA:   3'- -UCGCGCugCUUGUUgUCG----UGG------UGGGu -5'
5464 3' -55.6 NC_001798.1 + 88191 0.66 0.926034
Target:  5'- cGCGCGGCGGGcCAugAGCuuguaauaCACCg- -3'
miRNA:   3'- uCGCGCUGCUU-GUugUCGug------GUGGgu -5'
5464 3' -55.6 NC_001798.1 + 53969 0.66 0.926034
Target:  5'- cGgGCGGCGGucaGCGACGuccuGgGCCACCUg -3'
miRNA:   3'- uCgCGCUGCU---UGUUGU----CgUGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 52504 0.66 0.926034
Target:  5'- cGGCGCaggGACGAcGCGGCGGCcGCgCGCgCCGu -3'
miRNA:   3'- -UCGCG---CUGCU-UGUUGUCG-UG-GUG-GGU- -5'
5464 3' -55.6 NC_001798.1 + 1859 0.66 0.924951
Target:  5'- cGGCGuUGACGAcgaugagGCGGCggucgcaGGCGCCGgCCAg -3'
miRNA:   3'- -UCGC-GCUGCU-------UGUUG-------UCGUGGUgGGU- -5'
5464 3' -55.6 NC_001798.1 + 122837 0.66 0.920521
Target:  5'- gGGgGCGGCG-GCGGCGGCuCguCCCu -3'
miRNA:   3'- -UCgCGCUGCuUGUUGUCGuGguGGGu -5'
5464 3' -55.6 NC_001798.1 + 102229 0.66 0.920521
Target:  5'- gGGCGCGGCucGgGGCgGGCcUCGCCCGg -3'
miRNA:   3'- -UCGCGCUGcuUgUUG-UCGuGGUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 54997 0.66 0.920521
Target:  5'- cGC-CGGCGucuugcCGGCGGgGCCGCCCu -3'
miRNA:   3'- uCGcGCUGCuu----GUUGUCgUGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 113659 0.66 0.920521
Target:  5'- uGGCgGCGGCGGACuGCuuUGCCGCCUu -3'
miRNA:   3'- -UCG-CGCUGCUUGuUGucGUGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 40220 0.66 0.920521
Target:  5'- cGGgGuCGGCacACGGCAGCACacagCGCCCAg -3'
miRNA:   3'- -UCgC-GCUGcuUGUUGUCGUG----GUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 131904 0.66 0.920521
Target:  5'- cGC-CGACGAuGCAGCAGCuggGCCGCgUCGa -3'
miRNA:   3'- uCGcGCUGCU-UGUUGUCG---UGGUG-GGU- -5'
5464 3' -55.6 NC_001798.1 + 142192 0.66 0.920521
Target:  5'- cGCGgGGuCGAGCGcgcCAGgACCGCCUg -3'
miRNA:   3'- uCGCgCU-GCUUGUu--GUCgUGGUGGGu -5'
5464 3' -55.6 NC_001798.1 + 24297 0.66 0.920521
Target:  5'- cGCGCGA-GAAC-GCGGCGCUgACCgGg -3'
miRNA:   3'- uCGCGCUgCUUGuUGUCGUGG-UGGgU- -5'
5464 3' -55.6 NC_001798.1 + 56994 0.66 0.920521
Target:  5'- uGGUcaGCGACGGAgGGCGGaacacgcgaaCGCgCACCCAg -3'
miRNA:   3'- -UCG--CGCUGCUUgUUGUC----------GUG-GUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 90412 0.66 0.920521
Target:  5'- cGGCGCGuucccgcggcCGGGCuugaGGCGGUACCAgCCGa -3'
miRNA:   3'- -UCGCGCu---------GCUUG----UUGUCGUGGUgGGU- -5'
5464 3' -55.6 NC_001798.1 + 93153 0.66 0.920521
Target:  5'- cGGUGaUGGCGGGCGACGcCGCCcugGCCCu -3'
miRNA:   3'- -UCGC-GCUGCUUGUUGUcGUGG---UGGGu -5'
5464 3' -55.6 NC_001798.1 + 142498 0.66 0.920521
Target:  5'- cGGCGCGGgGGuGCGAUAacGCACCccuggacguccGCCCGa -3'
miRNA:   3'- -UCGCGCUgCU-UGUUGU--CGUGG-----------UGGGU- -5'
5464 3' -55.6 NC_001798.1 + 114503 0.66 0.919956
Target:  5'- uGGaCGgGACGGGCAuuagccuGCAucgccagcugcGCGCCAUCCAg -3'
miRNA:   3'- -UC-GCgCUGCUUGU-------UGU-----------CGUGGUGGGU- -5'
5464 3' -55.6 NC_001798.1 + 77430 0.66 0.91882
Target:  5'- aGGCGCGcCGGGCcugcgccCAGCcggagggggaccauGCCGCCCu -3'
miRNA:   3'- -UCGCGCuGCUUGuu-----GUCG--------------UGGUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.