miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5464 5' -58.7 NC_001798.1 + 55035 0.66 0.834561
Target:  5'- cGCcccGGacUCCCCGUaCAUCGaGGCGGa -3'
miRNA:   3'- aCGc--CCaaAGGGGCA-GUAGCgCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 94191 0.66 0.834561
Target:  5'- cUGCGGGccgugCCCCcugcugCAgcuccucgCGCGGCGGu -3'
miRNA:   3'- -ACGCCCaaa--GGGGca----GUa-------GCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 60128 0.66 0.834561
Target:  5'- gUGCGGuGUguguuUUCCCCGUagacCGUCuuGGCGu -3'
miRNA:   3'- -ACGCC-CA-----AAGGGGCA----GUAGcgCCGCu -5'
5464 5' -58.7 NC_001798.1 + 7050 0.66 0.832131
Target:  5'- --gGGGUUUCCCCGgccCAcccccaaaccccggUUGgGGCGGg -3'
miRNA:   3'- acgCCCAAAGGGGCa--GU--------------AGCgCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 154129 0.66 0.826401
Target:  5'- gGCGGGga-CCCCGgcggcgggaCAUgGCgGGCGGc -3'
miRNA:   3'- aCGCCCaaaGGGGCa--------GUAgCG-CCGCU- -5'
5464 5' -58.7 NC_001798.1 + 22776 0.66 0.826401
Target:  5'- cGgGGGacgUCUCCGggc-CGCGGCGGa -3'
miRNA:   3'- aCgCCCaa-AGGGGCaguaGCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 79857 0.66 0.818074
Target:  5'- cGUGGGgcgCCUCGaUgGaCGCGGCGGc -3'
miRNA:   3'- aCGCCCaaaGGGGC-AgUaGCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 60830 0.66 0.818074
Target:  5'- gGCGGccagUCuUCCGUCcgcucgCGCGGCGAc -3'
miRNA:   3'- aCGCCcaa-AG-GGGCAGua----GCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 122051 0.66 0.818074
Target:  5'- aGCGGGggagCCCUGggcgCGUCGgacgcggaGGCGGu -3'
miRNA:   3'- aCGCCCaaa-GGGGCa---GUAGCg-------CCGCU- -5'
5464 5' -58.7 NC_001798.1 + 83399 0.66 0.817233
Target:  5'- cGUGGGUcaCCCCGagguccgUCAgcgcCGCGGCc- -3'
miRNA:   3'- aCGCCCAaaGGGGC-------AGUa---GCGCCGcu -5'
5464 5' -58.7 NC_001798.1 + 153005 0.66 0.814698
Target:  5'- cGCGGGgcggUCgCCGgggCGgaguccgggcccgCGCGGCGGc -3'
miRNA:   3'- aCGCCCaa--AGgGGCa--GUa------------GCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 11639 0.66 0.800946
Target:  5'- cGCGGGcgUCCCUGU-GUCcccgGgGGCGGg -3'
miRNA:   3'- aCGCCCaaAGGGGCAgUAG----CgCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 121259 0.66 0.79216
Target:  5'- gGCGGGggUCCCgcUGUCcgcccUCGUGcGCGGc -3'
miRNA:   3'- aCGCCCaaAGGG--GCAGu----AGCGC-CGCU- -5'
5464 5' -58.7 NC_001798.1 + 109564 0.66 0.79216
Target:  5'- gGCGcGGUggCCCCGag--CGCGGCc- -3'
miRNA:   3'- aCGC-CCAaaGGGGCaguaGCGCCGcu -5'
5464 5' -58.7 NC_001798.1 + 24138 0.66 0.79216
Target:  5'- cGCGGGccgugCCCCaccugggguacGcCAUgGCGGCGGg -3'
miRNA:   3'- aCGCCCaaa--GGGG-----------CaGUAgCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 2962 0.67 0.783237
Target:  5'- gGCGGGg---CgCGUCGgcgUGCGGCGGg -3'
miRNA:   3'- aCGCCCaaagGgGCAGUa--GCGCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 121476 0.67 0.783237
Target:  5'- gGCGGGcuguucgucUCCCUGcCgGUCGCGuGCGAc -3'
miRNA:   3'- aCGCCCaa-------AGGGGCaG-UAGCGC-CGCU- -5'
5464 5' -58.7 NC_001798.1 + 47861 0.67 0.783237
Target:  5'- -cCGGGgg-CCCCGUgGgCGCcGGCGGg -3'
miRNA:   3'- acGCCCaaaGGGGCAgUaGCG-CCGCU- -5'
5464 5' -58.7 NC_001798.1 + 128500 0.67 0.774185
Target:  5'- cUGCGGcuggacgCCCaGUCGUCGgCGGUGAu -3'
miRNA:   3'- -ACGCCcaaa---GGGgCAGUAGC-GCCGCU- -5'
5464 5' -58.7 NC_001798.1 + 35785 0.67 0.774185
Target:  5'- gUGCuuGGGUcUCCuUCGUCGg-GCGGCGGg -3'
miRNA:   3'- -ACG--CCCAaAGG-GGCAGUagCGCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.