miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5465 3' -62.1 NC_001798.1 + 146696 0.66 0.703126
Target:  5'- gGGgggCGCgcagCUGAguGCUCUGCGGuUGCGGg -3'
miRNA:   3'- gCCa--GCGa---GGUU--CGGGGCGCC-ACGCC- -5'
5465 3' -62.1 NC_001798.1 + 97507 0.66 0.703126
Target:  5'- aGGaagaGCcCCGGGCCgCCGCGGaggaggggggGCGGa -3'
miRNA:   3'- gCCag--CGaGGUUCGG-GGCGCCa---------CGCC- -5'
5465 3' -62.1 NC_001798.1 + 54297 0.66 0.703126
Target:  5'- gGGcCGC-CCuGGCCCCGgaccugcuuCGGaGCGGa -3'
miRNA:   3'- gCCaGCGaGGuUCGGGGC---------GCCaCGCC- -5'
5465 3' -62.1 NC_001798.1 + 24888 0.66 0.703126
Target:  5'- uGGUCGCcggggCCcuGGGCCCgGCGcugccGCGGa -3'
miRNA:   3'- gCCAGCGa----GG--UUCGGGgCGCca---CGCC- -5'
5465 3' -62.1 NC_001798.1 + 22779 0.66 0.693591
Target:  5'- gGGaCGuCUCCGGGCCgCgGCGGagacgaccgGCGGc -3'
miRNA:   3'- gCCaGC-GAGGUUCGG-GgCGCCa--------CGCC- -5'
5465 3' -62.1 NC_001798.1 + 28807 0.66 0.693591
Target:  5'- gGGUC-CUCC--GCCgCCGCGGgccCGGg -3'
miRNA:   3'- gCCAGcGAGGuuCGG-GGCGCCac-GCC- -5'
5465 3' -62.1 NC_001798.1 + 135013 0.66 0.693591
Target:  5'- gGGUCG-UCCugcCCCCGCGG-GCa- -3'
miRNA:   3'- gCCAGCgAGGuucGGGGCGCCaCGcc -5'
5465 3' -62.1 NC_001798.1 + 98675 0.66 0.692635
Target:  5'- cCGGcCGCcccccgucCCGAGCCCCGCGaccaccaaggcccGgaaGCGGa -3'
miRNA:   3'- -GCCaGCGa-------GGUUCGGGGCGC-------------Ca--CGCC- -5'
5465 3' -62.1 NC_001798.1 + 117281 0.66 0.684011
Target:  5'- uGGgccaGCUCCAGGUggCCCGCcacgaaacGG-GCGGg -3'
miRNA:   3'- gCCag--CGAGGUUCG--GGGCG--------CCaCGCC- -5'
5465 3' -62.1 NC_001798.1 + 21712 0.66 0.684011
Target:  5'- cCGGUcuccgcCGCgcagCCGguguGCCCC-UGGUGCGGc -3'
miRNA:   3'- -GCCA------GCGa---GGUu---CGGGGcGCCACGCC- -5'
5465 3' -62.1 NC_001798.1 + 36254 0.66 0.684011
Target:  5'- cCGcG-CGCUCCuguguGGaCCCCGgGGUggGCGGc -3'
miRNA:   3'- -GC-CaGCGAGGu----UC-GGGGCgCCA--CGCC- -5'
5465 3' -62.1 NC_001798.1 + 128953 0.66 0.684011
Target:  5'- cCGGgcgCGUUCCGGGCCCgGaGGagGCGc -3'
miRNA:   3'- -GCCa--GCGAGGUUCGGGgCgCCa-CGCc -5'
5465 3' -62.1 NC_001798.1 + 1148 0.66 0.674392
Target:  5'- gCGG-CGUggCC-AGCCCCGCG--GCGGu -3'
miRNA:   3'- -GCCaGCGa-GGuUCGGGGCGCcaCGCC- -5'
5465 3' -62.1 NC_001798.1 + 146458 0.66 0.674392
Target:  5'- gCGGcCGCagCCGAGCagcgCCGCGGgcucCGGg -3'
miRNA:   3'- -GCCaGCGa-GGUUCGg---GGCGCCac--GCC- -5'
5465 3' -62.1 NC_001798.1 + 150332 0.66 0.674392
Target:  5'- gGGUCauGCgcgaCCGGGgCgCGCGGUGCGc -3'
miRNA:   3'- gCCAG--CGa---GGUUCgGgGCGCCACGCc -5'
5465 3' -62.1 NC_001798.1 + 51418 0.66 0.674392
Target:  5'- -cGUCGCgcaCGaugacGGCCCCGgGGcGCGGc -3'
miRNA:   3'- gcCAGCGag-GU-----UCGGGGCgCCaCGCC- -5'
5465 3' -62.1 NC_001798.1 + 39408 0.66 0.664742
Target:  5'- --uUCGCUCCGggaccggggcgcGGCCguCCGCG-UGCGGg -3'
miRNA:   3'- gccAGCGAGGU------------UCGG--GGCGCcACGCC- -5'
5465 3' -62.1 NC_001798.1 + 26187 0.66 0.664742
Target:  5'- cCGG-CGCUggacggCCGGGCCgCCGCcucgGGcGCGGg -3'
miRNA:   3'- -GCCaGCGA------GGUUCGG-GGCG----CCaCGCC- -5'
5465 3' -62.1 NC_001798.1 + 123391 0.66 0.664742
Target:  5'- aGG-CGacgCCAGGCCCCcCGGgagccGCGGc -3'
miRNA:   3'- gCCaGCga-GGUUCGGGGcGCCa----CGCC- -5'
5465 3' -62.1 NC_001798.1 + 24712 0.66 0.645378
Target:  5'- ---gCGC-CCGGGgCCCGCGGgcGCGGc -3'
miRNA:   3'- gccaGCGaGGUUCgGGGCGCCa-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.