miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5466 3' -61 NC_001798.1 + 32846 0.66 0.75536
Target:  5'- cUCGGCUUGcugcccgaaggaagCCGC--CCCCCACCGGa -3'
miRNA:   3'- -GGCUGAACa-------------GGCGccGGGGGUGGCUg -5'
5466 3' -61 NC_001798.1 + 77260 0.66 0.751694
Target:  5'- gUCGGCccUGggCGCGGCCgCCCGcgacCCGGCc -3'
miRNA:   3'- -GGCUGa-ACagGCGCCGG-GGGU----GGCUG- -5'
5466 3' -61 NC_001798.1 + 52579 0.66 0.751694
Target:  5'- gCCGACacggugGUCgcgugCGUGGCCCUgGCCG-Cg -3'
miRNA:   3'- -GGCUGaa----CAG-----GCGCCGGGGgUGGCuG- -5'
5466 3' -61 NC_001798.1 + 143387 0.66 0.751694
Target:  5'- aCGuGCgcGUCCgguGCGGUCCCCGCaauCGACu -3'
miRNA:   3'- gGC-UGaaCAGG---CGCCGGGGGUG---GCUG- -5'
5466 3' -61 NC_001798.1 + 5345 0.66 0.751694
Target:  5'- aCCGcaUUaUgCGCGGCCCCgCcCCGACg -3'
miRNA:   3'- -GGCugAAcAgGCGCCGGGG-GuGGCUG- -5'
5466 3' -61 NC_001798.1 + 18736 0.66 0.751694
Target:  5'- aCGcCcUG-CCGCGGaCUUCCGCUGACg -3'
miRNA:   3'- gGCuGaACaGGCGCC-GGGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 75978 0.66 0.751694
Target:  5'- gUGAUgcccgUGcCCGCcGCCCCgggCGCCGGCg -3'
miRNA:   3'- gGCUGa----ACaGGCGcCGGGG---GUGGCUG- -5'
5466 3' -61 NC_001798.1 + 57044 0.66 0.742462
Target:  5'- gCgGACgggcgGUCCGUccGGCCCCaCACCc-- -3'
miRNA:   3'- -GgCUGaa---CAGGCG--CCGGGG-GUGGcug -5'
5466 3' -61 NC_001798.1 + 48390 0.66 0.742462
Target:  5'- gCCGcCgcGaCCGCacgGGCCCCCGCCcGCu -3'
miRNA:   3'- -GGCuGaaCaGGCG---CCGGGGGUGGcUG- -5'
5466 3' -61 NC_001798.1 + 75466 0.66 0.742462
Target:  5'- gCCGGCccggCCGCGGCCCUgcUgGACu -3'
miRNA:   3'- -GGCUGaacaGGCGCCGGGGguGgCUG- -5'
5466 3' -61 NC_001798.1 + 1144 0.66 0.742462
Target:  5'- cUCGGCggcgUGgccagccCCGCGGCgguCCCCACCa-- -3'
miRNA:   3'- -GGCUGa---ACa------GGCGCCG---GGGGUGGcug -5'
5466 3' -61 NC_001798.1 + 76171 0.66 0.742462
Target:  5'- aCGACUgucgGUUucaCGUGGCCUCgGCCG-Cg -3'
miRNA:   3'- gGCUGAa---CAG---GCGCCGGGGgUGGCuG- -5'
5466 3' -61 NC_001798.1 + 80831 0.66 0.742462
Target:  5'- uCCGACaugagacgUGggCCGuCGGCCUCCuccacACCGAUc -3'
miRNA:   3'- -GGCUGa-------ACa-GGC-GCCGGGGG-----UGGCUG- -5'
5466 3' -61 NC_001798.1 + 4477 0.66 0.733143
Target:  5'- gUCGuCUccgGUCCGCGGa-CCCAgCGGCc -3'
miRNA:   3'- -GGCuGAa--CAGGCGCCggGGGUgGCUG- -5'
5466 3' -61 NC_001798.1 + 21347 0.66 0.733143
Target:  5'- cCCGGCccGUCCcccCGGCCcguCCCcCCGGCc -3'
miRNA:   3'- -GGCUGaaCAGGc--GCCGG---GGGuGGCUG- -5'
5466 3' -61 NC_001798.1 + 21386 0.66 0.733143
Target:  5'- cCCGGCccGUCCcccCGGCCcguCCCcCCGGCc -3'
miRNA:   3'- -GGCUGaaCAGGc--GCCGG---GGGuGGCUG- -5'
5466 3' -61 NC_001798.1 + 21425 0.66 0.733143
Target:  5'- cCCGGCccGUCCcccCGGCCcguCCCcCCGGCc -3'
miRNA:   3'- -GGCUGaaCAGGc--GCCGG---GGGuGGCUG- -5'
5466 3' -61 NC_001798.1 + 71819 0.66 0.733143
Target:  5'- cCCGGCcacgccgcUGUCCGCGcuGCuCCCCGuCgGGCg -3'
miRNA:   3'- -GGCUGa-------ACAGGCGC--CG-GGGGU-GgCUG- -5'
5466 3' -61 NC_001798.1 + 91490 0.66 0.723744
Target:  5'- gCCGAUgu-UCCcccCGGCUCUUACCGGCg -3'
miRNA:   3'- -GGCUGaacAGGc--GCCGGGGGUGGCUG- -5'
5466 3' -61 NC_001798.1 + 116400 0.66 0.723744
Target:  5'- gCCGGCUg--CUGCacaacacccaGGCCCgcgcggccgacgCCGCCGACg -3'
miRNA:   3'- -GGCUGAacaGGCG----------CCGGG------------GGUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.