miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5467 5' -58.8 NC_001798.1 + 29988 0.65 0.839083
Target:  5'- cCCCGuggGCCGUGCGcCGCCCCccgacccucuggggGGGCgAGGg -3'
miRNA:   3'- -GGGU---UGGCGUGUcGUGGGG--------------CUCG-UCC- -5'
5467 5' -58.8 NC_001798.1 + 20344 0.66 0.833478
Target:  5'- gCgCAGgCGguUGGCGCUgCCGGGCGGGu -3'
miRNA:   3'- -GgGUUgGCguGUCGUGG-GGCUCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 72468 0.66 0.833478
Target:  5'- gCCUGuacGCCGUggucGCAGaCGCCCaCGAGCgccuGGGg -3'
miRNA:   3'- -GGGU---UGGCG----UGUC-GUGGG-GCUCG----UCC- -5'
5467 5' -58.8 NC_001798.1 + 102432 0.66 0.833478
Target:  5'- cUCCAGgggacuggggcCCGCgaACAGCAUaCCCGGGUAcGGg -3'
miRNA:   3'- -GGGUU-----------GGCG--UGUCGUG-GGGCUCGU-CC- -5'
5467 5' -58.8 NC_001798.1 + 121344 0.66 0.833478
Target:  5'- gCCCAcgcgACCgGCgACuGCACCCCGuGGCGu- -3'
miRNA:   3'- -GGGU----UGG-CG-UGuCGUGGGGC-UCGUcc -5'
5467 5' -58.8 NC_001798.1 + 153034 0.66 0.833478
Target:  5'- gCCCGcgcggcGgCGCGCGGUuggccggcgccGCCCCcugGGGCGGGc -3'
miRNA:   3'- -GGGU------UgGCGUGUCG-----------UGGGG---CUCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 5312 0.66 0.833478
Target:  5'- cCCCGGCuCGC-CGGgguucCGCCCCcAGguGGa -3'
miRNA:   3'- -GGGUUG-GCGuGUC-----GUGGGGcUCguCC- -5'
5467 5' -58.8 NC_001798.1 + 15552 0.66 0.833478
Target:  5'- gCCCGGCCccggGCGuuGcCGCCgCCGcGGCGGGg -3'
miRNA:   3'- -GGGUUGG----CGUguC-GUGG-GGC-UCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 24032 0.66 0.833478
Target:  5'- cUCCAGaacCCGCGCguGGCGCCCgGGGaCGuGGc -3'
miRNA:   3'- -GGGUU---GGCGUG--UCGUGGGgCUC-GU-CC- -5'
5467 5' -58.8 NC_001798.1 + 74944 0.66 0.833478
Target:  5'- aCCCcACCGUcCAGCguggaggaucugACCUCGGGCgagAGGc -3'
miRNA:   3'- -GGGuUGGCGuGUCG------------UGGGGCUCG---UCC- -5'
5467 5' -58.8 NC_001798.1 + 121444 0.66 0.833478
Target:  5'- aCCCGgaccuccuGCCGCGC-GUcCCCagcgCGGGCGGGc -3'
miRNA:   3'- -GGGU--------UGGCGUGuCGuGGG----GCUCGUCC- -5'
5467 5' -58.8 NC_001798.1 + 75252 0.66 0.833478
Target:  5'- cCCCAaugugGCCGcCACGGCGgUCCGGcucGCGGc -3'
miRNA:   3'- -GGGU-----UGGC-GUGUCGUgGGGCU---CGUCc -5'
5467 5' -58.8 NC_001798.1 + 150210 0.66 0.833478
Target:  5'- aCCGgggguguugguGCCGCGgGGgACCCCGGGUc-- -3'
miRNA:   3'- gGGU-----------UGGCGUgUCgUGGGGCUCGucc -5'
5467 5' -58.8 NC_001798.1 + 147163 0.66 0.833478
Target:  5'- uCCCGgguaGCCGCcCGGCGCC--GGGCGGa -3'
miRNA:   3'- -GGGU----UGGCGuGUCGUGGggCUCGUCc -5'
5467 5' -58.8 NC_001798.1 + 131545 0.66 0.833478
Target:  5'- uCCCGGaCGCG-AGCGCCCCGA-CGGc -3'
miRNA:   3'- -GGGUUgGCGUgUCGUGGGGCUcGUCc -5'
5467 5' -58.8 NC_001798.1 + 86049 0.66 0.833478
Target:  5'- aUCCugcuGCUGCucgcCGGCACCCCcgccgucuggGAGuCGGGg -3'
miRNA:   3'- -GGGu---UGGCGu---GUCGUGGGG----------CUC-GUCC- -5'
5467 5' -58.8 NC_001798.1 + 81320 0.66 0.833478
Target:  5'- cCCCccCCGCACGGCAggcggaCCCGGGgGu- -3'
miRNA:   3'- -GGGuuGGCGUGUCGUg-----GGGCUCgUcc -5'
5467 5' -58.8 NC_001798.1 + 145769 0.66 0.83267
Target:  5'- cCCCcGCCGCc---CACCCCGGGguccacaCAGGa -3'
miRNA:   3'- -GGGuUGGCGugucGUGGGGCUC-------GUCC- -5'
5467 5' -58.8 NC_001798.1 + 96182 0.66 0.83267
Target:  5'- cCCCGGCCGCgguuuccgagcccACuGCGgCCCGA-CAGa -3'
miRNA:   3'- -GGGUUGGCG-------------UGuCGUgGGGCUcGUCc -5'
5467 5' -58.8 NC_001798.1 + 123357 0.66 0.83267
Target:  5'- aCCAACCugGCACAGCGggcacucuggcguCCCCaGGCGa- -3'
miRNA:   3'- gGGUUGG--CGUGUCGU-------------GGGGcUCGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.