miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5468 3' -58.8 NC_001798.1 + 25266 0.65 0.807168
Target:  5'- cUGGCgCCGCCAgCCGccGGGGCccagccacacgccgGCGCc -3'
miRNA:   3'- cACUG-GGUGGUgGGCuuUCCCG--------------CGUG- -5'
5468 3' -58.8 NC_001798.1 + 116295 0.66 0.804548
Target:  5'- -cGGCCCuggACCGCCaccgaGAcugccggauugacgcGGGGGgGCACg -3'
miRNA:   3'- caCUGGG---UGGUGGg----CU---------------UUCCCgCGUG- -5'
5468 3' -58.8 NC_001798.1 + 138180 0.66 0.801033
Target:  5'- -cGACCCgcggccgguGCCGCCCuugccgaacccaGGGAGGGUGUg- -3'
miRNA:   3'- caCUGGG---------UGGUGGG------------CUUUCCCGCGug -5'
5468 3' -58.8 NC_001798.1 + 137926 0.66 0.801033
Target:  5'- -cGGCCCgcgccucccccgGCCGCCCGGuccgccGCGCGCu -3'
miRNA:   3'- caCUGGG------------UGGUGGGCUuucc--CGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 69092 0.66 0.801033
Target:  5'- -cGGCCCGCCcggACCCc--AGGGCGgAg -3'
miRNA:   3'- caCUGGGUGG---UGGGcuuUCCCGCgUg -5'
5468 3' -58.8 NC_001798.1 + 28733 0.66 0.801033
Target:  5'- -gGGCCCGa-GCCCGAGcccGGGCcCACg -3'
miRNA:   3'- caCUGGGUggUGGGCUUu--CCCGcGUG- -5'
5468 3' -58.8 NC_001798.1 + 15819 0.66 0.801033
Target:  5'- -aGGCCaugaggCGCCGCCCGGuucGGGGgGCcCg -3'
miRNA:   3'- caCUGG------GUGGUGGGCUu--UCCCgCGuG- -5'
5468 3' -58.8 NC_001798.1 + 34482 0.66 0.798381
Target:  5'- --aACCUACCugCgaGAAcgcgcggcguucgaGGGGCGCGCu -3'
miRNA:   3'- cacUGGGUGGugGg-CUU--------------UCCCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 84209 0.66 0.792143
Target:  5'- cGUGAUCgCGCCcCCCG---GGGCGC-Cg -3'
miRNA:   3'- -CACUGG-GUGGuGGGCuuuCCCGCGuG- -5'
5468 3' -58.8 NC_001798.1 + 23629 0.66 0.785836
Target:  5'- -gGACCCccgcggcgaccgcggGCCGCCUGGAGcgccgccGGGCccGCGCg -3'
miRNA:   3'- caCUGGG---------------UGGUGGGCUUU-------CCCG--CGUG- -5'
5468 3' -58.8 NC_001798.1 + 31851 0.66 0.783113
Target:  5'- gGUGccGCCCcCCACgCCGcGGAGGGgGCGg -3'
miRNA:   3'- -CAC--UGGGuGGUG-GGC-UUUCCCgCGUg -5'
5468 3' -58.8 NC_001798.1 + 150457 0.66 0.783113
Target:  5'- -gGGgCgACgGCCgCGcgGGGGCGCGCg -3'
miRNA:   3'- caCUgGgUGgUGG-GCuuUCCCGCGUG- -5'
5468 3' -58.8 NC_001798.1 + 35031 0.66 0.783113
Target:  5'- -cGGCCCGCCcgggggucCCCGAggcAAGaGGCGgACc -3'
miRNA:   3'- caCUGGGUGGu-------GGGCU---UUC-CCGCgUG- -5'
5468 3' -58.8 NC_001798.1 + 81416 0.66 0.783113
Target:  5'- -gGAUCCACgGCCUGGAGGagcuGGCGUccgACg -3'
miRNA:   3'- caCUGGGUGgUGGGCUUUC----CCGCG---UG- -5'
5468 3' -58.8 NC_001798.1 + 102445 0.66 0.783113
Target:  5'- -gGGCCCGCgaacagcaUACCCGGGuacGGGUGgGCg -3'
miRNA:   3'- caCUGGGUG--------GUGGGCUUu--CCCGCgUG- -5'
5468 3' -58.8 NC_001798.1 + 123865 0.66 0.783113
Target:  5'- cGUGGCCCACgaGCUCGAc--GGCGCc- -3'
miRNA:   3'- -CACUGGGUGg-UGGGCUuucCCGCGug -5'
5468 3' -58.8 NC_001798.1 + 145626 0.66 0.783113
Target:  5'- -cGcCCCACCgccccGCCCGGcagGGGGGCcccgGCGCc -3'
miRNA:   3'- caCuGGGUGG-----UGGGCU---UUCCCG----CGUG- -5'
5468 3' -58.8 NC_001798.1 + 22870 0.66 0.783113
Target:  5'- -cGcCCCGCCgcgcgGCCCGGGuucGGGUgGCACg -3'
miRNA:   3'- caCuGGGUGG-----UGGGCUUu--CCCG-CGUG- -5'
5468 3' -58.8 NC_001798.1 + 17944 0.66 0.782202
Target:  5'- cGUGGCCC-CCACCUuacccguucgcaGGuccggacgucgggGGGGGCuGCGCg -3'
miRNA:   3'- -CACUGGGuGGUGGG------------CU-------------UUCCCG-CGUG- -5'
5468 3' -58.8 NC_001798.1 + 135229 0.66 0.77395
Target:  5'- -aGGCCgGgCugCCGGAagcccgGGGGCGgGCg -3'
miRNA:   3'- caCUGGgUgGugGGCUU------UCCCGCgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.