miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5470 3' -49.3 NC_001798.1 + 79680 0.66 0.998253
Target:  5'- aUGCGUcccGAGGCGGccuGCGUgcgGCCCCCGc -3'
miRNA:   3'- -AUGCA---UUUCGUUu--UGCAg--UGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 75909 0.66 0.998253
Target:  5'- aUGCGcGAGGCcuuAGACGcccUCGCCCgCGGg -3'
miRNA:   3'- -AUGCaUUUCGu--UUUGC---AGUGGGgGUC- -5'
5470 3' -49.3 NC_001798.1 + 154417 0.66 0.998048
Target:  5'- gGCGgcGGGCGGGcggcagggcagccccGCG-CGCCCCCu- -3'
miRNA:   3'- aUGCauUUCGUUU---------------UGCaGUGGGGGuc -5'
5470 3' -49.3 NC_001798.1 + 79 0.66 0.998048
Target:  5'- gGCGgcGGGCGGGcggcagggcagccccGCG-CGCCCCCu- -3'
miRNA:   3'- aUGCauUUCGUUU---------------UGCaGUGGGGGuc -5'
5470 3' -49.3 NC_001798.1 + 60375 0.66 0.9979
Target:  5'- -uCGUGAGGCGcagcuGGACGUCggggucGCCCUgGGg -3'
miRNA:   3'- auGCAUUUCGU-----UUUGCAG------UGGGGgUC- -5'
5470 3' -49.3 NC_001798.1 + 136873 0.66 0.9979
Target:  5'- aGCG-AGGGCGugGCGUgGCUCCgGGg -3'
miRNA:   3'- aUGCaUUUCGUuuUGCAgUGGGGgUC- -5'
5470 3' -49.3 NC_001798.1 + 121051 0.66 0.9979
Target:  5'- aGCGUAuAAGCGc-ACGUgCGCCCgCGGg -3'
miRNA:   3'- aUGCAU-UUCGUuuUGCA-GUGGGgGUC- -5'
5470 3' -49.3 NC_001798.1 + 81329 0.66 0.997862
Target:  5'- cACGgcAGGCGGAccCGgggguccUCGCCCCCAc -3'
miRNA:   3'- aUGCauUUCGUUUu-GC-------AGUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 115515 0.66 0.99749
Target:  5'- -cCGUAcgGGGCGu-ACGUCGCggCCCCGGc -3'
miRNA:   3'- auGCAU--UUCGUuuUGCAGUG--GGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 78210 0.66 0.99749
Target:  5'- cUACGUGGAGCuccGCGaUCGCCUggacgccauCCGGg -3'
miRNA:   3'- -AUGCAUUUCGuuuUGC-AGUGGG---------GGUC- -5'
5470 3' -49.3 NC_001798.1 + 139371 0.66 0.997355
Target:  5'- gGCGgggAGGGCucgcGGGACGUCcgggcaccagguccGCCCCCAc -3'
miRNA:   3'- aUGCa--UUUCG----UUUUGCAG--------------UGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 47236 0.66 0.997016
Target:  5'- gGCGUGucGUuGGGCG--GCCCCCGGc -3'
miRNA:   3'- aUGCAUuuCGuUUUGCagUGGGGGUC- -5'
5470 3' -49.3 NC_001798.1 + 133968 0.66 0.997016
Target:  5'- uUGgGUGGAGgAGAGCGUCAgCgCCAu -3'
miRNA:   3'- -AUgCAUUUCgUUUUGCAGUgGgGGUc -5'
5470 3' -49.3 NC_001798.1 + 95690 0.66 0.996469
Target:  5'- gGCGgcgGGGGCGGccGGCGUCGCCCg--- -3'
miRNA:   3'- aUGCa--UUUCGUU--UUGCAGUGGGgguc -5'
5470 3' -49.3 NC_001798.1 + 51172 0.66 0.996469
Target:  5'- cGCGUccGAGGCccGGGCGgcggCGCCCCCc- -3'
miRNA:   3'- aUGCA--UUUCGu-UUUGCa---GUGGGGGuc -5'
5470 3' -49.3 NC_001798.1 + 48320 0.67 0.995842
Target:  5'- gUugGUGAAucccgacgcggcGCAGGACGUCgacgcgaccgcgGCCgCCCGGg -3'
miRNA:   3'- -AugCAUUU------------CGUUUUGCAG------------UGG-GGGUC- -5'
5470 3' -49.3 NC_001798.1 + 124150 0.67 0.995842
Target:  5'- gGCG-GAGGCcugucccuGCGUCGCCCCguGc -3'
miRNA:   3'- aUGCaUUUCGuuu-----UGCAGUGGGGguC- -5'
5470 3' -49.3 NC_001798.1 + 151496 0.67 0.995842
Target:  5'- -cCGUGcacacGGCAcacACGUCGCCCCCc- -3'
miRNA:   3'- auGCAUu----UCGUuu-UGCAGUGGGGGuc -5'
5470 3' -49.3 NC_001798.1 + 63452 0.67 0.995128
Target:  5'- cGCGccgccucGGGCuuGGCGUgGCCCCCGa -3'
miRNA:   3'- aUGCau-----UUCGuuUUGCAgUGGGGGUc -5'
5470 3' -49.3 NC_001798.1 + 146423 0.67 0.994316
Target:  5'- gGCGagccGGGCAGAguGCGgaGCCCCCGGa -3'
miRNA:   3'- aUGCau--UUCGUUU--UGCagUGGGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.