miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5471 3' -63.6 NC_001798.1 + 152725 0.66 0.635733
Target:  5'- aGgGGCCgaucagcccaCCCaCCCGGcgGCGcGCGAGGCu -3'
miRNA:   3'- gUgCCGG----------GGGaGGGCC--UGC-UGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 23698 0.66 0.635733
Target:  5'- cCACGGgCCgCUUCacggCCGGGCGGCcccGGCg -3'
miRNA:   3'- -GUGCCgGG-GGAG----GGCCUGCUGcu-CCG- -5'
5471 3' -63.6 NC_001798.1 + 32301 0.66 0.635733
Target:  5'- -uCGGCCCCCgcgcugcugcgCCgCGGGgGcCGAGGa -3'
miRNA:   3'- guGCCGGGGGa----------GG-GCCUgCuGCUCCg -5'
5471 3' -63.6 NC_001798.1 + 33799 0.66 0.635733
Target:  5'- uGCGGggagaCUCCCaUCgGGGCGAgGGGGCu -3'
miRNA:   3'- gUGCC-----GGGGGaGGgCCUGCUgCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 66820 0.66 0.635733
Target:  5'- uCGCGGagCCCggCCCGGugcCGGCGcccAGGCc -3'
miRNA:   3'- -GUGCCggGGGa-GGGCCu--GCUGC---UCCG- -5'
5471 3' -63.6 NC_001798.1 + 77686 0.66 0.635733
Target:  5'- gGCGGCCCagCgcgCCCGGggcaGCaGCGAGcGCu -3'
miRNA:   3'- gUGCCGGGg-Ga--GGGCC----UGcUGCUC-CG- -5'
5471 3' -63.6 NC_001798.1 + 127913 0.66 0.635733
Target:  5'- --aGaGCCCCCcacgugggcaaCCC-GACGGCGGGGCc -3'
miRNA:   3'- gugC-CGGGGGa----------GGGcCUGCUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 3772 0.66 0.635733
Target:  5'- --gGGCgCCCacaCGGGCGcCGGGGCg -3'
miRNA:   3'- gugCCGgGGGaggGCCUGCuGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 26174 0.66 0.635733
Target:  5'- cCGCGccguGCUCCCggCgCUGGACGGCcGGGCc -3'
miRNA:   3'- -GUGC----CGGGGGa-G-GGCCUGCUGcUCCG- -5'
5471 3' -63.6 NC_001798.1 + 81922 0.66 0.635733
Target:  5'- -cCGGCCCCgC-CUCGGcuCG-CGGGGCc -3'
miRNA:   3'- guGCCGGGG-GaGGGCCu-GCuGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 88664 0.66 0.635733
Target:  5'- cCAUGGCCaCCaggCCCGcGGCcgUGAGGCc -3'
miRNA:   3'- -GUGCCGG-GGga-GGGC-CUGcuGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 150429 0.66 0.635733
Target:  5'- gGCGGCgCggggcggaCU-CCGGACGcGCGGGGCg -3'
miRNA:   3'- gUGCCGgGg-------GAgGGCCUGC-UGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 54880 0.66 0.633813
Target:  5'- cCACGcccccccGCCCCCUCCgaGGACGcagauuccauuuACGAgucggugGGCg -3'
miRNA:   3'- -GUGC-------CGGGGGAGGg-CCUGC------------UGCU-------CCG- -5'
5471 3' -63.6 NC_001798.1 + 78288 0.66 0.629974
Target:  5'- gGCGGCCgccgcggagcagauaUCCgcggCCCGGAaUGACccgGAGGCc -3'
miRNA:   3'- gUGCCGG---------------GGGa---GGGCCU-GCUG---CUCCG- -5'
5471 3' -63.6 NC_001798.1 + 93030 0.66 0.629974
Target:  5'- nCGCGGCCCUC-CCCGccgacauuacguucACGGCcuucGAGGCc -3'
miRNA:   3'- -GUGCCGGGGGaGGGCc-------------UGCUG----CUCCG- -5'
5471 3' -63.6 NC_001798.1 + 124134 0.66 0.626134
Target:  5'- gGCGcGCCCCCg-CCGuGGCG--GAGGCc -3'
miRNA:   3'- gUGC-CGGGGGagGGC-CUGCugCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 92404 0.66 0.626134
Target:  5'- cCGCGGUCgUCgggUCCCGcACGACG-GGCc -3'
miRNA:   3'- -GUGCCGGgGG---AGGGCcUGCUGCuCCG- -5'
5471 3' -63.6 NC_001798.1 + 85714 0.66 0.626134
Target:  5'- --aGGCCgacgCCCUcCCCGGGCGcCGccaAGGUg -3'
miRNA:   3'- gugCCGG----GGGA-GGGCCUGCuGC---UCCG- -5'
5471 3' -63.6 NC_001798.1 + 74048 0.66 0.626134
Target:  5'- gGCGGCCUgcguugcguguUUUCgCGGguguACGGCGAGGUg -3'
miRNA:   3'- gUGCCGGG-----------GGAGgGCC----UGCUGCUCCG- -5'
5471 3' -63.6 NC_001798.1 + 20349 0.66 0.626134
Target:  5'- gGCGGUUggCgCUgCCGGGCGGguuCGGGGCg -3'
miRNA:   3'- gUGCCGG--GgGAgGGCCUGCU---GCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.