Results 1 - 20 of 253 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5471 | 3' | -63.6 | NC_001798.1 | + | 152725 | 0.66 | 0.635733 |
Target: 5'- aGgGGCCgaucagcccaCCCaCCCGGcgGCGcGCGAGGCu -3' miRNA: 3'- gUgCCGG----------GGGaGGGCC--UGC-UGCUCCG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 23698 | 0.66 | 0.635733 |
Target: 5'- cCACGGgCCgCUUCacggCCGGGCGGCcccGGCg -3' miRNA: 3'- -GUGCCgGG-GGAG----GGCCUGCUGcu-CCG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 32301 | 0.66 | 0.635733 |
Target: 5'- -uCGGCCCCCgcgcugcugcgCCgCGGGgGcCGAGGa -3' miRNA: 3'- guGCCGGGGGa----------GG-GCCUgCuGCUCCg -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 33799 | 0.66 | 0.635733 |
Target: 5'- uGCGGggagaCUCCCaUCgGGGCGAgGGGGCu -3' miRNA: 3'- gUGCC-----GGGGGaGGgCCUGCUgCUCCG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 66820 | 0.66 | 0.635733 |
Target: 5'- uCGCGGagCCCggCCCGGugcCGGCGcccAGGCc -3' miRNA: 3'- -GUGCCggGGGa-GGGCCu--GCUGC---UCCG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 77686 | 0.66 | 0.635733 |
Target: 5'- gGCGGCCCagCgcgCCCGGggcaGCaGCGAGcGCu -3' miRNA: 3'- gUGCCGGGg-Ga--GGGCC----UGcUGCUC-CG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 127913 | 0.66 | 0.635733 |
Target: 5'- --aGaGCCCCCcacgugggcaaCCC-GACGGCGGGGCc -3' miRNA: 3'- gugC-CGGGGGa----------GGGcCUGCUGCUCCG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 3772 | 0.66 | 0.635733 |
Target: 5'- --gGGCgCCCacaCGGGCGcCGGGGCg -3' miRNA: 3'- gugCCGgGGGaggGCCUGCuGCUCCG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 26174 | 0.66 | 0.635733 |
Target: 5'- cCGCGccguGCUCCCggCgCUGGACGGCcGGGCc -3' miRNA: 3'- -GUGC----CGGGGGa-G-GGCCUGCUGcUCCG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 81922 | 0.66 | 0.635733 |
Target: 5'- -cCGGCCCCgC-CUCGGcuCG-CGGGGCc -3' miRNA: 3'- guGCCGGGG-GaGGGCCu-GCuGCUCCG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 88664 | 0.66 | 0.635733 |
Target: 5'- cCAUGGCCaCCaggCCCGcGGCcgUGAGGCc -3' miRNA: 3'- -GUGCCGG-GGga-GGGC-CUGcuGCUCCG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 150429 | 0.66 | 0.635733 |
Target: 5'- gGCGGCgCggggcggaCU-CCGGACGcGCGGGGCg -3' miRNA: 3'- gUGCCGgGg-------GAgGGCCUGC-UGCUCCG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 54880 | 0.66 | 0.633813 |
Target: 5'- cCACGcccccccGCCCCCUCCgaGGACGcagauuccauuuACGAgucggugGGCg -3' miRNA: 3'- -GUGC-------CGGGGGAGGg-CCUGC------------UGCU-------CCG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 78288 | 0.66 | 0.629974 |
Target: 5'- gGCGGCCgccgcggagcagauaUCCgcggCCCGGAaUGACccgGAGGCc -3' miRNA: 3'- gUGCCGG---------------GGGa---GGGCCU-GCUG---CUCCG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 93030 | 0.66 | 0.629974 |
Target: 5'- nCGCGGCCCUC-CCCGccgacauuacguucACGGCcuucGAGGCc -3' miRNA: 3'- -GUGCCGGGGGaGGGCc-------------UGCUG----CUCCG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 124134 | 0.66 | 0.626134 |
Target: 5'- gGCGcGCCCCCg-CCGuGGCG--GAGGCc -3' miRNA: 3'- gUGC-CGGGGGagGGC-CUGCugCUCCG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 92404 | 0.66 | 0.626134 |
Target: 5'- cCGCGGUCgUCgggUCCCGcACGACG-GGCc -3' miRNA: 3'- -GUGCCGGgGG---AGGGCcUGCUGCuCCG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 85714 | 0.66 | 0.626134 |
Target: 5'- --aGGCCgacgCCCUcCCCGGGCGcCGccaAGGUg -3' miRNA: 3'- gugCCGG----GGGA-GGGCCUGCuGC---UCCG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 74048 | 0.66 | 0.626134 |
Target: 5'- gGCGGCCUgcguugcguguUUUCgCGGguguACGGCGAGGUg -3' miRNA: 3'- gUGCCGGG-----------GGAGgGCC----UGCUGCUCCG- -5' |
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5471 | 3' | -63.6 | NC_001798.1 | + | 20349 | 0.66 | 0.626134 |
Target: 5'- gGCGGUUggCgCUgCCGGGCGGguuCGGGGCg -3' miRNA: 3'- gUGCCGG--GgGAgGGCCUGCU---GCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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