miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5471 5' -50.3 NC_001798.1 + 76331 0.66 0.99716
Target:  5'- gGACCUGCUccaGCGGGgccagccccUAGAUGCCc- -3'
miRNA:   3'- gCUGGACGAug-UGCUU---------GUCUAUGGuc -5'
5471 5' -50.3 NC_001798.1 + 65477 0.66 0.99716
Target:  5'- gCGACaUGCUggugucccGguCGAACAGggACCAGg -3'
miRNA:   3'- -GCUGgACGA--------UguGCUUGUCuaUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 21045 0.66 0.99716
Target:  5'- cCGGCCUGCgagaaaGCGCGGAUguuGggAUCGGg -3'
miRNA:   3'- -GCUGGACGa-----UGUGCUUGu--CuaUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 88953 0.66 0.99716
Target:  5'- gCGGCCUGUUGCuuguCGAGgAGGacgGCCu- -3'
miRNA:   3'- -GCUGGACGAUGu---GCUUgUCUa--UGGuc -5'
5471 5' -50.3 NC_001798.1 + 12311 0.66 0.996644
Target:  5'- aGGcCCUGCa--GCGAGCGGccgggcAUACCGGg -3'
miRNA:   3'- gCU-GGACGaugUGCUUGUC------UAUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 20463 0.66 0.996054
Target:  5'- gGGCCUG----GCGAGCAGAgcGCCGGu -3'
miRNA:   3'- gCUGGACgaugUGCUUGUCUa-UGGUC- -5'
5471 5' -50.3 NC_001798.1 + 33217 0.66 0.996054
Target:  5'- aGGCCUGUUGgucuuuauCAUaGAACAGA-GCCGGg -3'
miRNA:   3'- gCUGGACGAU--------GUG-CUUGUCUaUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 13022 0.66 0.995861
Target:  5'- aGGCCUucgaggugaggcacGCUGC-CGGGgGGAUGCgCAGg -3'
miRNA:   3'- gCUGGA--------------CGAUGuGCUUgUCUAUG-GUC- -5'
5471 5' -50.3 NC_001798.1 + 49686 0.66 0.995381
Target:  5'- aCGGCCucUGCUGCGaccuggaGAGCuGGcGCCAGu -3'
miRNA:   3'- -GCUGG--ACGAUGUg------CUUGuCUaUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 50058 0.66 0.994617
Target:  5'- gGGCCUGCUcgaccucccggACgACGAugacgcuccuGCGGAgGCCGGg -3'
miRNA:   3'- gCUGGACGA-----------UG-UGCU----------UGUCUaUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 131948 0.66 0.994617
Target:  5'- -cGCCUGCUgcGCACGugcccGCGGAUcaucGCCAu -3'
miRNA:   3'- gcUGGACGA--UGUGCu----UGUCUA----UGGUc -5'
5471 5' -50.3 NC_001798.1 + 74850 0.66 0.994535
Target:  5'- aGACCUGCgggucCugGAgguggggGCAG-UGCCGGu -3'
miRNA:   3'- gCUGGACGau---GugCU-------UGUCuAUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 104926 0.66 0.993755
Target:  5'- -aGCCgGCcGCACGAcuGCAGAgacaggACCAGc -3'
miRNA:   3'- gcUGGaCGaUGUGCU--UGUCUa-----UGGUC- -5'
5471 5' -50.3 NC_001798.1 + 137294 0.67 0.992784
Target:  5'- uGGCCUGUUugAgGAugGCGGcgGCCGu -3'
miRNA:   3'- gCUGGACGAugUgCU--UGUCuaUGGUc -5'
5471 5' -50.3 NC_001798.1 + 108780 0.67 0.992784
Target:  5'- gGGCCUGCUACGgacucCGggUcGGUACguGu -3'
miRNA:   3'- gCUGGACGAUGU-----GCuuGuCUAUGguC- -5'
5471 5' -50.3 NC_001798.1 + 2832 0.67 0.990485
Target:  5'- gCGACCagGCUcacgGCGCGcACGGcgGCCAc -3'
miRNA:   3'- -GCUGGa-CGA----UGUGCuUGUCuaUGGUc -5'
5471 5' -50.3 NC_001798.1 + 90719 0.67 0.990485
Target:  5'- aGAUCgcGCgggGCACGGcacuGCAGGUGCCGa -3'
miRNA:   3'- gCUGGa-CGa--UGUGCU----UGUCUAUGGUc -5'
5471 5' -50.3 NC_001798.1 + 97713 0.67 0.987647
Target:  5'- gGGCgCUGCgUGCGCGAGCAGc-GCgGGg -3'
miRNA:   3'- gCUG-GACG-AUGUGCUUGUCuaUGgUC- -5'
5471 5' -50.3 NC_001798.1 + 135310 0.68 0.986002
Target:  5'- gGGCCcggGCcgUGCugGAGCGccuGGUGCCGGa -3'
miRNA:   3'- gCUGGa--CG--AUGugCUUGU---CUAUGGUC- -5'
5471 5' -50.3 NC_001798.1 + 69900 0.68 0.986002
Target:  5'- gGGCCcGaaccCACGAACGGAaUGCCGGg -3'
miRNA:   3'- gCUGGaCgau-GUGCUUGUCU-AUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.