miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5472 5' -65 NC_001798.1 + 115895 0.66 0.57443
Target:  5'- gCCGuccGCGGGGCGUucgaGGACCgcagcuaCCCgGCGg -3'
miRNA:   3'- gGGC---CGCCCCGUA----CCUGG-------GGGgUGCg -5'
5472 5' -65 NC_001798.1 + 97491 0.66 0.57443
Target:  5'- aCCGGgGGGGCcgaGGaggaagaGCCCCgggCCGcCGCg -3'
miRNA:   3'- gGGCCgCCCCGua-CC-------UGGGG---GGU-GCG- -5'
5472 5' -65 NC_001798.1 + 149674 0.66 0.565986
Target:  5'- gCgGGCcccGGGCucgGGGCCgCCCuCGCGUg -3'
miRNA:   3'- gGgCCGc--CCCGua-CCUGG-GGG-GUGCG- -5'
5472 5' -65 NC_001798.1 + 57456 0.66 0.565986
Target:  5'- gCCCGGUcuuggGGGGCG-GGGCCggUUugGCg -3'
miRNA:   3'- -GGGCCG-----CCCCGUaCCUGGggGGugCG- -5'
5472 5' -65 NC_001798.1 + 71092 0.66 0.565986
Target:  5'- gCCC-GCGGucGGCGUGcGCgCCCCCggggACGCu -3'
miRNA:   3'- -GGGcCGCC--CCGUACcUG-GGGGG----UGCG- -5'
5472 5' -65 NC_001798.1 + 129741 0.66 0.565986
Target:  5'- -aCGGCGGGaccccgaCGUGGcccGCCCUccugCCACGCu -3'
miRNA:   3'- ggGCCGCCCc------GUACC---UGGGG----GGUGCG- -5'
5472 5' -65 NC_001798.1 + 28937 0.66 0.565986
Target:  5'- cCCCGcuauauauccGCGaGGGCccGGcGCCgCCCCGcCGCu -3'
miRNA:   3'- -GGGC----------CGC-CCCGuaCC-UGG-GGGGU-GCG- -5'
5472 5' -65 NC_001798.1 + 29480 0.66 0.556641
Target:  5'- aCCCGGUugguccccGGGGacgGGGCCgCCCCGa-- -3'
miRNA:   3'- -GGGCCG--------CCCCguaCCUGG-GGGGUgcg -5'
5472 5' -65 NC_001798.1 + 4437 0.66 0.556641
Target:  5'- gCUGGCcauGGGGuCcgGGuACgCCCCGCGg -3'
miRNA:   3'- gGGCCG---CCCC-GuaCC-UGgGGGGUGCg -5'
5472 5' -65 NC_001798.1 + 20768 0.66 0.556641
Target:  5'- uCCC-GCGGGGagcgacGGcGCCCgCCGCGUa -3'
miRNA:   3'- -GGGcCGCCCCgua---CC-UGGGgGGUGCG- -5'
5472 5' -65 NC_001798.1 + 22302 0.66 0.556641
Target:  5'- -gCGGCGGcGGCGcgaccaacGGGCCgCCgCCACGg -3'
miRNA:   3'- ggGCCGCC-CCGUa-------CCUGG-GG-GGUGCg -5'
5472 5' -65 NC_001798.1 + 25967 0.66 0.556641
Target:  5'- gCCGGCGGcGCG-GGACCUgCgC-CGCa -3'
miRNA:   3'- gGGCCGCCcCGUaCCUGGGgG-GuGCG- -5'
5472 5' -65 NC_001798.1 + 98499 0.66 0.556641
Target:  5'- -gCGGCGGGaGCgacgcgcccccGUaGGCCCgCCAUGCg -3'
miRNA:   3'- ggGCCGCCC-CG-----------UAcCUGGGgGGUGCG- -5'
5472 5' -65 NC_001798.1 + 121397 0.66 0.556641
Target:  5'- gCCGGCGGaugcGGUggGGGCgauccuagCCCCCgucaucccgGCGCa -3'
miRNA:   3'- gGGCCGCC----CCGuaCCUG--------GGGGG---------UGCG- -5'
5472 5' -65 NC_001798.1 + 142422 0.66 0.556641
Target:  5'- gCCGGCauccugacGGuGGUGUGGACCCCggaCAC-Ca -3'
miRNA:   3'- gGGCCG--------CC-CCGUACCUGGGGg--GUGcG- -5'
5472 5' -65 NC_001798.1 + 102573 0.66 0.547342
Target:  5'- -gUGGCGGGGCGcGGAUUgCCCG-GUg -3'
miRNA:   3'- ggGCCGCCCCGUaCCUGGgGGGUgCG- -5'
5472 5' -65 NC_001798.1 + 132496 0.66 0.547342
Target:  5'- gCUGGgGcGGGUAcGGACUCUCCGCa- -3'
miRNA:   3'- gGGCCgC-CCCGUaCCUGGGGGGUGcg -5'
5472 5' -65 NC_001798.1 + 146637 0.66 0.547342
Target:  5'- cCCCcGC-GGGCAUccgGcGGCCggCCCCACGCc -3'
miRNA:   3'- -GGGcCGcCCCGUA---C-CUGG--GGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 26003 0.66 0.547342
Target:  5'- cUCCGGCcgcguguucGGGCcgGGGgUCUUCGCGCg -3'
miRNA:   3'- -GGGCCGc--------CCCGuaCCUgGGGGGUGCG- -5'
5472 5' -65 NC_001798.1 + 23910 0.66 0.547342
Target:  5'- gCCCGGUucGaGGCcucGGGCgCCCCgGCGCc -3'
miRNA:   3'- -GGGCCG--CcCCGua-CCUG-GGGGgUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.