miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5473 3' -62.9 NC_001798.1 + 70573 0.66 0.656478
Target:  5'- aCCaCGGCgG-CCCUGGgGCCggugcgcguccgccaGUGuGCCg -3'
miRNA:   3'- -GG-GCCGgUaGGGGCCgCGG---------------UACuCGG- -5'
5473 3' -62.9 NC_001798.1 + 3870 0.66 0.652615
Target:  5'- gCCC-GCCGUacagcacgcgCCCCGGgGgCGggGGGCCg -3'
miRNA:   3'- -GGGcCGGUA----------GGGGCCgCgGUa-CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 24893 0.66 0.652615
Target:  5'- gCCggGGCCcugggCCCGGCGCUgccgcgGAGCCc -3'
miRNA:   3'- gGG--CCGGuag--GGGCCGCGGua----CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 28079 0.66 0.652615
Target:  5'- gCCGGCCGcguccucgcUCCUgCGGCGCUGgcugcugGuGCCc -3'
miRNA:   3'- gGGCCGGU---------AGGG-GCCGCGGUa------CuCGG- -5'
5473 3' -62.9 NC_001798.1 + 89127 0.66 0.652615
Target:  5'- uCCCGGUCcgCCuCCaGGUGCgCGacGGCCu -3'
miRNA:   3'- -GGGCCGGuaGG-GG-CCGCG-GUacUCGG- -5'
5473 3' -62.9 NC_001798.1 + 7057 0.66 0.652615
Target:  5'- cCCCGGCCcacccccaaaCCCCGGUugggGCgGgcAGCCg -3'
miRNA:   3'- -GGGCCGGua--------GGGGCCG----CGgUacUCGG- -5'
5473 3' -62.9 NC_001798.1 + 39038 0.66 0.652615
Target:  5'- gCCaGCgucuCAUCCgCGGaCGCCA-GGGCCu -3'
miRNA:   3'- gGGcCG----GUAGGgGCC-GCGGUaCUCGG- -5'
5473 3' -62.9 NC_001798.1 + 150255 0.66 0.652615
Target:  5'- gCCCGGCCcUCCCgacccGCGCgCGUcGGUCg -3'
miRNA:   3'- -GGGCCGGuAGGGgc---CGCG-GUAcUCGG- -5'
5473 3' -62.9 NC_001798.1 + 69438 0.66 0.649716
Target:  5'- aCUGGCCGUCCUCcugGGgGCCcuGUcccccaaaagcaccGGGCCg -3'
miRNA:   3'- gGGCCGGUAGGGG---CCgCGG--UA--------------CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 107289 0.66 0.646816
Target:  5'- gCCUGGCCAgacgccaacgCCCgGGCgagcggcuugaccugGCCAUGcuguccGCCa -3'
miRNA:   3'- -GGGCCGGUa---------GGGgCCG---------------CGGUACu-----CGG- -5'
5473 3' -62.9 NC_001798.1 + 53767 0.66 0.642947
Target:  5'- uCCUGGCCuacGUCUCCGuGUuguaCCAUuGGGCCu -3'
miRNA:   3'- -GGGCCGG---UAGGGGC-CGc---GGUA-CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 54373 0.66 0.642947
Target:  5'- gUCCGGCCcaccggggggCCgCGGCGCgGUcggcggGAGCUg -3'
miRNA:   3'- -GGGCCGGua--------GGgGCCGCGgUA------CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 58675 0.66 0.642947
Target:  5'- gCCC-GCCA-CCaCCGcCGCCGUcaGGGCCg -3'
miRNA:   3'- -GGGcCGGUaGG-GGCcGCGGUA--CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 103508 0.66 0.642947
Target:  5'- gCCCGG--GUCCCCGcUGUCGUacaGGGCCa -3'
miRNA:   3'- -GGGCCggUAGGGGCcGCGGUA---CUCGG- -5'
5473 3' -62.9 NC_001798.1 + 109356 0.66 0.642947
Target:  5'- gCUGGCCGg-CCUGGcCGCCcgggGAGCa -3'
miRNA:   3'- gGGCCGGUagGGGCC-GCGGua--CUCGg -5'
5473 3' -62.9 NC_001798.1 + 129137 0.66 0.642947
Target:  5'- uCCCguGGCCuggagCUCCGGggagcugguuCGCCGcGAGCCc -3'
miRNA:   3'- -GGG--CCGGua---GGGGCC----------GCGGUaCUCGG- -5'
5473 3' -62.9 NC_001798.1 + 42695 0.66 0.641013
Target:  5'- aCCGGCgucggggaaccaGUCCCCGuCGCCGUcGucGCCa -3'
miRNA:   3'- gGGCCGg-----------UAGGGGCcGCGGUA-Cu-CGG- -5'
5473 3' -62.9 NC_001798.1 + 25922 0.66 0.637143
Target:  5'- aCCUGGCCugcgaggugcugcCCgCCGGCagugcGCCGUGcgcuGGCCg -3'
miRNA:   3'- -GGGCCGGua-----------GG-GGCCG-----CGGUAC----UCGG- -5'
5473 3' -62.9 NC_001798.1 + 74640 0.66 0.633273
Target:  5'- aCCGGCCccccgaggCCCCccggGGgGCCucGGGCCc -3'
miRNA:   3'- gGGCCGGua------GGGG----CCgCGGuaCUCGG- -5'
5473 3' -62.9 NC_001798.1 + 48357 0.66 0.633273
Target:  5'- aCCgCGGCCG--CCCGGgGCCGccccgcgGGGCg -3'
miRNA:   3'- -GG-GCCGGUagGGGCCgCGGUa------CUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.