miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5473 5' -51.1 NC_001798.1 + 92262 0.66 0.993779
Target:  5'- gGGuACGUGUAUGGccgcgccuguccGGCCGaaggccugGAGCUGCu -3'
miRNA:   3'- aCU-UGCACGUGCU------------CCGGCa-------UUUGACG- -5'
5473 5' -51.1 NC_001798.1 + 90006 0.66 0.993779
Target:  5'- cGAACu----CGGGGCCGU--ACUGCu -3'
miRNA:   3'- aCUUGcacguGCUCCGGCAuuUGACG- -5'
5473 5' -51.1 NC_001798.1 + 15218 0.66 0.993779
Target:  5'- gGAGCGUcCGCGGGuCCGUGuGGgUGCg -3'
miRNA:   3'- aCUUGCAcGUGCUCcGGCAU-UUgACG- -5'
5473 5' -51.1 NC_001798.1 + 6615 0.66 0.993779
Target:  5'- gGGACGgggGgACG-GGCCGgggGGACgggGCc -3'
miRNA:   3'- aCUUGCa--CgUGCuCCGGCa--UUUGa--CG- -5'
5473 5' -51.1 NC_001798.1 + 133352 0.66 0.993779
Target:  5'- aGGACGUGCugGAG-CUGcUGAACc-- -3'
miRNA:   3'- aCUUGCACGugCUCcGGC-AUUUGacg -5'
5473 5' -51.1 NC_001798.1 + 27608 0.66 0.993779
Target:  5'- aGGGgGcGCGCGGGGCUGcc--CUGCc -3'
miRNA:   3'- aCUUgCaCGUGCUCCGGCauuuGACG- -5'
5473 5' -51.1 NC_001798.1 + 133856 0.66 0.992817
Target:  5'- cUGGcccAUGaUGCAgGGGGCgGUGAACUuuaGCa -3'
miRNA:   3'- -ACU---UGC-ACGUgCUCCGgCAUUUGA---CG- -5'
5473 5' -51.1 NC_001798.1 + 104591 0.66 0.992817
Target:  5'- gGAACGUcGCcCGGGGCCGccgguaGCa -3'
miRNA:   3'- aCUUGCA-CGuGCUCCGGCauuugaCG- -5'
5473 5' -51.1 NC_001798.1 + 133480 0.66 0.992817
Target:  5'- cUGAGCGgcugccccccGCGCGGGuCCGUGAGCg-- -3'
miRNA:   3'- -ACUUGCa---------CGUGCUCcGGCAUUUGacg -5'
5473 5' -51.1 NC_001798.1 + 151789 0.66 0.992817
Target:  5'- -aGGCGUGC--GGGGCgGcGGGCUGCu -3'
miRNA:   3'- acUUGCACGugCUCCGgCaUUUGACG- -5'
5473 5' -51.1 NC_001798.1 + 149293 0.66 0.992817
Target:  5'- cGggUG-GCGCGAccggaGGCCGUGGAaguccaGCg -3'
miRNA:   3'- aCuuGCaCGUGCU-----CCGGCAUUUga----CG- -5'
5473 5' -51.1 NC_001798.1 + 74485 0.66 0.992506
Target:  5'- cGAGCG-GCGCGuGGCCaucacccaccccCUGCg -3'
miRNA:   3'- aCUUGCaCGUGCuCCGGcauuu-------GACG- -5'
5473 5' -51.1 NC_001798.1 + 86960 0.66 0.99174
Target:  5'- gGAGCucugccUGCACGAGcGCCGUcgcuACcGCg -3'
miRNA:   3'- aCUUGc-----ACGUGCUC-CGGCAuu--UGaCG- -5'
5473 5' -51.1 NC_001798.1 + 111183 0.66 0.99174
Target:  5'- uUGGGCG-GgAgGAGGUCGaacaugagGAGCUGCu -3'
miRNA:   3'- -ACUUGCaCgUgCUCCGGCa-------UUUGACG- -5'
5473 5' -51.1 NC_001798.1 + 116848 0.66 0.99174
Target:  5'- gGGGCGcUGCACGccGgCGU--GCUGCu -3'
miRNA:   3'- aCUUGC-ACGUGCucCgGCAuuUGACG- -5'
5473 5' -51.1 NC_001798.1 + 88177 0.66 0.99174
Target:  5'- aUGGACGggaccUGCGCGcggcGGGCCaUGAGCUuGUa -3'
miRNA:   3'- -ACUUGC-----ACGUGC----UCCGGcAUUUGA-CG- -5'
5473 5' -51.1 NC_001798.1 + 91799 0.66 0.99174
Target:  5'- aUGAcgcGCGggGCGUGGGGaCCGUGGGCgggGCc -3'
miRNA:   3'- -ACU---UGCa-CGUGCUCC-GGCAUUUGa--CG- -5'
5473 5' -51.1 NC_001798.1 + 84018 0.66 0.991625
Target:  5'- cGAACG-GCGuccuCGGGGCCcaugaaccgaaacGcGAGCUGCa -3'
miRNA:   3'- aCUUGCaCGU----GCUCCGG-------------CaUUUGACG- -5'
5473 5' -51.1 NC_001798.1 + 85256 0.66 0.990539
Target:  5'- --cGCGgccGCGCGGGGCCGcgcGCgagGCu -3'
miRNA:   3'- acuUGCa--CGUGCUCCGGCauuUGa--CG- -5'
5473 5' -51.1 NC_001798.1 + 95186 0.66 0.990539
Target:  5'- cGAccGCGUGUuucAGGCCGgGAACUGg -3'
miRNA:   3'- aCU--UGCACGugcUCCGGCaUUUGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.