miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5474 5' -57.9 NC_001798.1 + 122825 0.66 0.870173
Target:  5'- gCC--AGGGcGGUCGGGgG-CgGCGGc -3'
miRNA:   3'- aGGuuUCCCaCCAGCCCgCaGaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 105600 0.66 0.862873
Target:  5'- gUCCAuguucGAGGGcGG-CGGGCGg--GCGa -3'
miRNA:   3'- -AGGU-----UUCCCaCCaGCCCGCagaCGCc -5'
5474 5' -57.9 NC_001798.1 + 11171 0.66 0.847685
Target:  5'- aCCAcgauGGGGGcGGUgGGGCGggcCUGCc- -3'
miRNA:   3'- aGGU----UUCCCaCCAgCCCGCa--GACGcc -5'
5474 5' -57.9 NC_001798.1 + 6225 0.66 0.847685
Target:  5'- cCCGGGGGGccGGcCGGGgGgacggGCGGg -3'
miRNA:   3'- aGGUUUCCCa-CCaGCCCgCaga--CGCC- -5'
5474 5' -57.9 NC_001798.1 + 34726 0.66 0.847685
Target:  5'- --gGAAGGGgcgagGGUCGGGCccgggaGCGGg -3'
miRNA:   3'- aggUUUCCCa----CCAGCCCGcaga--CGCC- -5'
5474 5' -57.9 NC_001798.1 + 28622 0.66 0.847685
Target:  5'- cCCGAcGGG-GGUCcuGGGCGcgCgaGCGGg -3'
miRNA:   3'- aGGUUuCCCaCCAG--CCCGCa-Ga-CGCC- -5'
5474 5' -57.9 NC_001798.1 + 146115 0.66 0.839808
Target:  5'- --gGGGGGGUGGUgGcGGCGgcgGUGGa -3'
miRNA:   3'- aggUUUCCCACCAgC-CCGCagaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 11654 0.66 0.839808
Target:  5'- gUCCccGGGGgcgggGGUCGGGUcUCgGgGGg -3'
miRNA:   3'- -AGGuuUCCCa----CCAGCCCGcAGaCgCC- -5'
5474 5' -57.9 NC_001798.1 + 51020 0.66 0.83901
Target:  5'- cCCGAGGgcGGUGGagUCGGGUuaaugggGUacCUGCGGg -3'
miRNA:   3'- aGGUUUC--CCACC--AGCCCG-------CA--GACGCC- -5'
5474 5' -57.9 NC_001798.1 + 33275 0.67 0.823521
Target:  5'- gUCUugguGGGUGGgCGGGCuggCUGgCGGg -3'
miRNA:   3'- -AGGuuu-CCCACCaGCCCGca-GAC-GCC- -5'
5474 5' -57.9 NC_001798.1 + 10382 0.67 0.823521
Target:  5'- gUCGucGGG-GGUCGGG-GUCggcacagggGCGGg -3'
miRNA:   3'- aGGUuuCCCaCCAGCCCgCAGa--------CGCC- -5'
5474 5' -57.9 NC_001798.1 + 55749 0.67 0.823521
Target:  5'- gCCGcacgggggauAAGGGUGGcCGGcGCG-CUGCa- -3'
miRNA:   3'- aGGU----------UUCCCACCaGCC-CGCaGACGcc -5'
5474 5' -57.9 NC_001798.1 + 148265 0.67 0.822689
Target:  5'- gCCAGgguaaggaggggcGGGcGUGG-CGGGCagGUgUGCGGg -3'
miRNA:   3'- aGGUU-------------UCC-CACCaGCCCG--CAgACGCC- -5'
5474 5' -57.9 NC_001798.1 + 48602 0.67 0.815126
Target:  5'- gCgGGAGGGgcgGGagGGGCGggagggGCGGg -3'
miRNA:   3'- aGgUUUCCCa--CCagCCCGCaga---CGCC- -5'
5474 5' -57.9 NC_001798.1 + 48566 0.67 0.815126
Target:  5'- gCgGGAGGGgcgGGagGGGCGggagggGCGGg -3'
miRNA:   3'- aGgUUUCCCa--CCagCCCGCaga---CGCC- -5'
5474 5' -57.9 NC_001798.1 + 15186 0.67 0.810012
Target:  5'- gUUCGGGGGGUGGgggggcuggcgagcCGGggggaGCGUCcGCGGg -3'
miRNA:   3'- -AGGUUUCCCACCa-------------GCC-----CGCAGaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 4376 0.67 0.806572
Target:  5'- gCCGGcggcggugguGGuGGUGGUgGuGGUGUCgGCGGg -3'
miRNA:   3'- aGGUU----------UC-CCACCAgC-CCGCAGaCGCC- -5'
5474 5' -57.9 NC_001798.1 + 43022 0.67 0.806572
Target:  5'- cCCGGGGGGagcgcgGGgcccCGGGCGcaaaUGCGGc -3'
miRNA:   3'- aGGUUUCCCa-----CCa---GCCCGCag--ACGCC- -5'
5474 5' -57.9 NC_001798.1 + 17665 0.67 0.801366
Target:  5'- gUCCAGgagggguaggaucgcGGGGUGGuUCaGGCGUCUcaGCa- -3'
miRNA:   3'- -AGGUU---------------UCCCACC-AGcCCGCAGA--CGcc -5'
5474 5' -57.9 NC_001798.1 + 153756 0.67 0.797867
Target:  5'- gCCAGguGGGGcGGaaggGGGCG-CUGCGGc -3'
miRNA:   3'- aGGUU--UCCCaCCag--CCCGCaGACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.