miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5475 3' -55.8 NC_001798.1 + 138401 0.66 0.927581
Target:  5'- --cCCGCGcgGCGCCagCCACCCcgcGCuCGCu -3'
miRNA:   3'- gaaGGCGUa-UGUGG--GGUGGGa--UG-GCG- -5'
5475 3' -55.8 NC_001798.1 + 7169 0.66 0.927581
Target:  5'- gCUUCCGaCcgACGggcCCCCGCaCCgggGCgGCg -3'
miRNA:   3'- -GAAGGC-GuaUGU---GGGGUG-GGa--UGgCG- -5'
5475 3' -55.8 NC_001798.1 + 79430 0.66 0.927581
Target:  5'- uCUUCgCGCccucgACGCCCgCGCCCggGCCu- -3'
miRNA:   3'- -GAAG-GCGua---UGUGGG-GUGGGa-UGGcg -5'
5475 3' -55.8 NC_001798.1 + 94181 0.66 0.927581
Target:  5'- --aCC-CGUACACCugcgggccgugCC-CCCUGCUGCa -3'
miRNA:   3'- gaaGGcGUAUGUGG-----------GGuGGGAUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 122521 0.66 0.927581
Target:  5'- --cCUGCGc-CACCCgCGCCCcgUGCUGCa -3'
miRNA:   3'- gaaGGCGUauGUGGG-GUGGG--AUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 126313 0.66 0.927581
Target:  5'- -cUCCGgAgccCGCCCCGgguCCC-GCCGCc -3'
miRNA:   3'- gaAGGCgUau-GUGGGGU---GGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 131057 0.66 0.927581
Target:  5'- ---gCGCGagguCACCgCGCCC-ACCGCg -3'
miRNA:   3'- gaagGCGUau--GUGGgGUGGGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 139305 0.66 0.927581
Target:  5'- --gCCGCGUcgcCGCCCCGCgU--CCGCa -3'
miRNA:   3'- gaaGGCGUAu--GUGGGGUGgGauGGCG- -5'
5475 3' -55.8 NC_001798.1 + 81765 0.66 0.927581
Target:  5'- --aUCGCGcGCGCCCCgGgCCU-CCGCc -3'
miRNA:   3'- gaaGGCGUaUGUGGGG-UgGGAuGGCG- -5'
5475 3' -55.8 NC_001798.1 + 115586 0.66 0.927581
Target:  5'- --gCgGCA-GCGCCUCGCCCacgGCCGg -3'
miRNA:   3'- gaaGgCGUaUGUGGGGUGGGa--UGGCg -5'
5475 3' -55.8 NC_001798.1 + 28537 0.66 0.922742
Target:  5'- --cCCGUGU-CuCCCCGCCCgcaggugugcuucucGCCGCg -3'
miRNA:   3'- gaaGGCGUAuGuGGGGUGGGa--------------UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 24890 0.66 0.922192
Target:  5'- --gUCGCcgGgGCCCUggGCCCggcgcUGCCGCg -3'
miRNA:   3'- gaaGGCGuaUgUGGGG--UGGG-----AUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 31578 0.66 0.922192
Target:  5'- --gCCGCGcGC-CCCCGCgCgGCCGUc -3'
miRNA:   3'- gaaGGCGUaUGuGGGGUGgGaUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 51147 0.66 0.922192
Target:  5'- --cCCGCGguCACCCCGgguCCCgACgCGCg -3'
miRNA:   3'- gaaGGCGUauGUGGGGU---GGGaUG-GCG- -5'
5475 3' -55.8 NC_001798.1 + 32296 0.66 0.922192
Target:  5'- -cUCCcUcgGC-CCCCGCgCUGCUGCg -3'
miRNA:   3'- gaAGGcGuaUGuGGGGUGgGAUGGCG- -5'
5475 3' -55.8 NC_001798.1 + 82330 0.66 0.922192
Target:  5'- --cCCGCc-GCcCCCCACCCcagucacCCGCg -3'
miRNA:   3'- gaaGGCGuaUGuGGGGUGGGau-----GGCG- -5'
5475 3' -55.8 NC_001798.1 + 90664 0.66 0.922192
Target:  5'- --gCCGCGgaacgACGCCCCcggcgACUCgcgcaggGCCGCc -3'
miRNA:   3'- gaaGGCGUa----UGUGGGG-----UGGGa------UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 22437 0.66 0.922192
Target:  5'- -cUCCGCGUccuccuccuuuCcCCCCGCCCcGCgCGCc -3'
miRNA:   3'- gaAGGCGUAu----------GuGGGGUGGGaUG-GCG- -5'
5475 3' -55.8 NC_001798.1 + 29018 0.66 0.922192
Target:  5'- --gCCGCGcggGCccggACUCCGCCCcggcgACCGCc -3'
miRNA:   3'- gaaGGCGUa--UG----UGGGGUGGGa----UGGCG- -5'
5475 3' -55.8 NC_001798.1 + 153254 0.66 0.922192
Target:  5'- --cCCGC--GCGCCgCCGCC--GCCGCc -3'
miRNA:   3'- gaaGGCGuaUGUGG-GGUGGgaUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.