miRNA display CGI


Results 1 - 20 of 364 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5476 3' -55.6 NC_001798.1 + 154510 0.66 0.938419
Target:  5'- cGCGCGCcGCgGGGcugccuucccGCGGGcgcCCCCGCGc -3'
miRNA:   3'- aCGUGUGcUGgUUU----------UGCCU---GGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 101098 0.66 0.938419
Target:  5'- aGCGCACGgaacacaagGCCAGAAagaaGGgcacgagcGCCCUGCu -3'
miRNA:   3'- aCGUGUGC---------UGGUUUUg---CC--------UGGGGCGc -5'
5476 3' -55.6 NC_001798.1 + 2874 0.66 0.938419
Target:  5'- cUGcCGC-CGGCCAcgcGCaGGuCCCCGCGc -3'
miRNA:   3'- -AC-GUGuGCUGGUuu-UG-CCuGGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 58370 0.66 0.938419
Target:  5'- aGCgGCAgGACCGGgccuGACGGAgccgcgucagacCCUCGCGc -3'
miRNA:   3'- aCG-UGUgCUGGUU----UUGCCU------------GGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 61460 0.66 0.938419
Target:  5'- aGCGcCGgGGCCuc--CGGGCCCCGg- -3'
miRNA:   3'- aCGU-GUgCUGGuuuuGCCUGGGGCgc -5'
5476 3' -55.6 NC_001798.1 + 75136 0.66 0.938419
Target:  5'- gGCG-GCGGCgAcGACGGG-CCCGCGa -3'
miRNA:   3'- aCGUgUGCUGgUuUUGCCUgGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 153235 0.66 0.938419
Target:  5'- gGCcCGCGGCgGcggaGGACCCgCGCGc -3'
miRNA:   3'- aCGuGUGCUGgUuuugCCUGGG-GCGC- -5'
5476 3' -55.6 NC_001798.1 + 172 0.66 0.938419
Target:  5'- cGCGCGCcGCgGGGcugccuucccGCGGGcgcCCCCGCGc -3'
miRNA:   3'- aCGUGUGcUGgUUU----------UGCCU---GGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 31784 0.66 0.938419
Target:  5'- cGCGCGCGggucgggaggGCCGggcgcGGAgGGAggacccggggucCCCCGCGg -3'
miRNA:   3'- aCGUGUGC----------UGGU-----UUUgCCU------------GGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 36318 0.66 0.938419
Target:  5'- gGCGCG-GGCCGGGGcCGGGgCUCGCu -3'
miRNA:   3'- aCGUGUgCUGGUUUU-GCCUgGGGCGc -5'
5476 3' -55.6 NC_001798.1 + 74413 0.66 0.938419
Target:  5'- gGCGgACcuGACCGccGCGG-CCCUGCa -3'
miRNA:   3'- aCGUgUG--CUGGUuuUGCCuGGGGCGc -5'
5476 3' -55.6 NC_001798.1 + 135803 0.66 0.938419
Target:  5'- gUGUGCGCGGcCCGGGGCgucauggaGGACgCCUGUGa -3'
miRNA:   3'- -ACGUGUGCU-GGUUUUG--------CCUG-GGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 81434 0.66 0.937943
Target:  5'- aGCugGCGuCCGAcgacgccGGCGGcCCCaCGCc -3'
miRNA:   3'- aCGugUGCuGGUU-------UUGCCuGGG-GCGc -5'
5476 3' -55.6 NC_001798.1 + 27497 0.66 0.937943
Target:  5'- gGCGCGgGAaaAAAGCcgcgcggGGGCgCCCGCGg -3'
miRNA:   3'- aCGUGUgCUggUUUUG-------CCUG-GGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 43531 0.66 0.933547
Target:  5'- gGC-CGCGucucccGCCAGGGCGGuuuCCCUGgGg -3'
miRNA:   3'- aCGuGUGC------UGGUUUUGCCu--GGGGCgC- -5'
5476 3' -55.6 NC_001798.1 + 97782 0.66 0.933547
Target:  5'- cUGCcCGCGACCuucgccGCGGugCCaacggcuuCGCGg -3'
miRNA:   3'- -ACGuGUGCUGGuuu---UGCCugGG--------GCGC- -5'
5476 3' -55.6 NC_001798.1 + 102415 0.66 0.933547
Target:  5'- aGCGCgGCGAUCugggccuccagGGGACuGGGgCCCGCGa -3'
miRNA:   3'- aCGUG-UGCUGG-----------UUUUG-CCUgGGGCGC- -5'
5476 3' -55.6 NC_001798.1 + 106837 0.66 0.933547
Target:  5'- cGCGCAgcUGAUgGAGGCccugGGGCCgCGCGa -3'
miRNA:   3'- aCGUGU--GCUGgUUUUG----CCUGGgGCGC- -5'
5476 3' -55.6 NC_001798.1 + 150608 0.66 0.933547
Target:  5'- cGCugAUGACUAugggGGGCuccuGGGCCgCGCGg -3'
miRNA:   3'- aCGugUGCUGGU----UUUG----CCUGGgGCGC- -5'
5476 3' -55.6 NC_001798.1 + 37196 0.66 0.933547
Target:  5'- gGCGcCGCG-CCGAacGACGGGCgCgGCGc -3'
miRNA:   3'- aCGU-GUGCuGGUU--UUGCCUGgGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.