miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5476 5' -53.4 NC_001798.1 + 30192 0.65 0.975127
Target:  5'- gGCGCGGGGgucccgccucacgccCCGCGCCc -3'
miRNA:   3'- gCGCGCCUCaauaaauca------GGCGCGGa -5'
5476 5' -53.4 NC_001798.1 + 153036 0.66 0.973804
Target:  5'- cCGCGCGGcGgcgcgcggUUGGcCgGCGCCg -3'
miRNA:   3'- -GCGCGCCuCaaua----AAUCaGgCGCGGa -5'
5476 5' -53.4 NC_001798.1 + 146437 0.66 0.967373
Target:  5'- aGUGCGGAGcccccggAGcCCGCgGCCg -3'
miRNA:   3'- gCGCGCCUCaauaaa-UCaGGCG-CGGa -5'
5476 5' -53.4 NC_001798.1 + 26501 0.66 0.964779
Target:  5'- cCGCGCGGGGacgGUgcUGG-CCGCGgCg -3'
miRNA:   3'- -GCGCGCCUCaa-UAa-AUCaGGCGCgGa -5'
5476 5' -53.4 NC_001798.1 + 85290 0.66 0.964779
Target:  5'- gGgGCGGGGgccgg-GGUCCGC-CCg -3'
miRNA:   3'- gCgCGCCUCaauaaaUCAGGCGcGGa -5'
5476 5' -53.4 NC_001798.1 + 17682 0.66 0.964109
Target:  5'- -uCGCGGGGUgGUUcAGgcgucucagcagCCGCGCCUc -3'
miRNA:   3'- gcGCGCCUCAaUAAaUCa-----------GGCGCGGA- -5'
5476 5' -53.4 NC_001798.1 + 26036 0.66 0.963087
Target:  5'- gCGCGUGGAGgccgcgcacgCGCGCCUg -3'
miRNA:   3'- -GCGCGCCUCaauaaaucagGCGCGGA- -5'
5476 5' -53.4 NC_001798.1 + 77761 0.66 0.961338
Target:  5'- cCGCGCcGAGUUcgacgUGGUCgagcUGCGCCg -3'
miRNA:   3'- -GCGCGcCUCAAuaa--AUCAG----GCGCGGa -5'
5476 5' -53.4 NC_001798.1 + 150451 0.67 0.953772
Target:  5'- aCGCGCGGGGcgac--GG-CCGCGCg- -3'
miRNA:   3'- -GCGCGCCUCaauaaaUCaGGCGCGga -5'
5476 5' -53.4 NC_001798.1 + 11758 0.67 0.952146
Target:  5'- gGCGCGGGGccgaaaagGGaagCUGCGCCg -3'
miRNA:   3'- gCGCGCCUCaauaaa--UCa--GGCGCGGa -5'
5476 5' -53.4 NC_001798.1 + 78528 0.67 0.948351
Target:  5'- gCGCGCGGAGgccaccgagcgGGUCauggCGgGCCUg -3'
miRNA:   3'- -GCGCGCCUCaauaaa-----UCAG----GCgCGGA- -5'
5476 5' -53.4 NC_001798.1 + 150382 0.67 0.948351
Target:  5'- gGCGCGGGcccggccgcGUCCGCGCUc -3'
miRNA:   3'- gCGCGCCUcaauaaau-CAGGCGCGGa -5'
5476 5' -53.4 NC_001798.1 + 51958 0.67 0.94065
Target:  5'- aGCGCgGGAGg-----GG-CCGCGCCc -3'
miRNA:   3'- gCGCG-CCUCaauaaaUCaGGCGCGGa -5'
5476 5' -53.4 NC_001798.1 + 39437 0.67 0.94065
Target:  5'- gCGUGCGGGGg-----GGUCagggacaGCGCCa -3'
miRNA:   3'- -GCGCGCCUCaauaaaUCAGg------CGCGGa -5'
5476 5' -53.4 NC_001798.1 + 151840 0.67 0.937764
Target:  5'- gGCGCGGGGcgugaggcgGGacccCCGCGCCg -3'
miRNA:   3'- gCGCGCCUCaauaaa---UCa---GGCGCGGa -5'
5476 5' -53.4 NC_001798.1 + 52871 0.67 0.935791
Target:  5'- cCGUGCuGGGGccgcg-GGUCCGCGCg- -3'
miRNA:   3'- -GCGCG-CCUCaauaaaUCAGGCGCGga -5'
5476 5' -53.4 NC_001798.1 + 70243 0.68 0.930687
Target:  5'- aGCGCGGAcgagccGgcGUUUcuGUCCGCgGCCa -3'
miRNA:   3'- gCGCGCCU------CaaUAAAu-CAGGCG-CGGa -5'
5476 5' -53.4 NC_001798.1 + 2340 0.68 0.928042
Target:  5'- gGCGCGGGGaagagcgggUGGUCCGUgagcucgGCCa -3'
miRNA:   3'- gCGCGCCUCaauaa----AUCAGGCG-------CGGa -5'
5476 5' -53.4 NC_001798.1 + 4567 0.68 0.919738
Target:  5'- gCGCGCauGGAGgg----GGUCCGCGgCg -3'
miRNA:   3'- -GCGCG--CCUCaauaaaUCAGGCGCgGa -5'
5476 5' -53.4 NC_001798.1 + 30834 0.69 0.90018
Target:  5'- cCGCGCucccugucgcugGGGGgacacacGGUCCGCGCCc -3'
miRNA:   3'- -GCGCG------------CCUCaauaaa-UCAGGCGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.