miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5478 5' -55.5 NC_001798.1 + 51174 0.66 0.937646
Target:  5'- cGUCcgaggCC-CGGGCGgcggcGCCCCCCcgccGGGCg -3'
miRNA:   3'- cCAGa----GGuGUUUGU-----UGGGGGGa---CCCG- -5'
5478 5' -55.5 NC_001798.1 + 16934 0.66 0.937646
Target:  5'- --cCUCCAC-----GCCCCCCgGGGg -3'
miRNA:   3'- ccaGAGGUGuuuguUGGGGGGaCCCg -5'
5478 5' -55.5 NC_001798.1 + 7410 0.66 0.937646
Target:  5'- aGGgacCCGCGAcccccACGACCCCCaC-GGGUg -3'
miRNA:   3'- -CCagaGGUGUU-----UGUUGGGGG-GaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 74620 0.66 0.934726
Target:  5'- cGUCcagaccCCugGGGCcgaccggccccccgaGGCCCCCCgggGGGCc -3'
miRNA:   3'- cCAGa-----GGugUUUG---------------UUGGGGGGa--CCCG- -5'
5478 5' -55.5 NC_001798.1 + 36738 0.66 0.932732
Target:  5'- cGUCUgCAUGcgugcguuaauuAGCAACCCCUg-GGGCu -3'
miRNA:   3'- cCAGAgGUGU------------UUGUUGGGGGgaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 137118 0.66 0.932732
Target:  5'- --aCUCCcguccagaACGAaccGCAACcgCCCCCUGGGg -3'
miRNA:   3'- ccaGAGG--------UGUU---UGUUG--GGGGGACCCg -5'
5478 5' -55.5 NC_001798.1 + 73118 0.66 0.932732
Target:  5'- cGGaCUCCGUGGACcuguCUCCCCagGGGCu -3'
miRNA:   3'- -CCaGAGGUGUUUGuu--GGGGGGa-CCCG- -5'
5478 5' -55.5 NC_001798.1 + 138899 0.66 0.932732
Target:  5'- cGGUCcgcuugggCCGCccggcgcaAAGCAgucuACCaCCCCgUGGGCa -3'
miRNA:   3'- -CCAGa-------GGUG--------UUUGU----UGG-GGGG-ACCCG- -5'
5478 5' -55.5 NC_001798.1 + 78824 0.66 0.932732
Target:  5'- ----cCCGCGgcGACGGCCccggCCCCUGGcGCg -3'
miRNA:   3'- ccagaGGUGU--UUGUUGG----GGGGACC-CG- -5'
5478 5' -55.5 NC_001798.1 + 45830 0.66 0.931211
Target:  5'- cGGUCUagaugCCAguggagcCAAACcccccGGCCCCCCgcuugcuuggggGGGCg -3'
miRNA:   3'- -CCAGA-----GGU-------GUUUG-----UUGGGGGGa-----------CCCG- -5'
5478 5' -55.5 NC_001798.1 + 48102 0.66 0.927581
Target:  5'- ----cCCACGgcgccGugGACCCCCC-GGGUg -3'
miRNA:   3'- ccagaGGUGU-----UugUUGGGGGGaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 69994 0.66 0.927581
Target:  5'- gGGUCcCCggGCGAuacuUAGCCCCuCCguauaGGGCg -3'
miRNA:   3'- -CCAGaGG--UGUUu---GUUGGGG-GGa----CCCG- -5'
5478 5' -55.5 NC_001798.1 + 153051 0.66 0.927581
Target:  5'- cGGUUggCCGgc-GCcGCCCCCUgGGGCg -3'
miRNA:   3'- -CCAGa-GGUguuUGuUGGGGGGaCCCG- -5'
5478 5' -55.5 NC_001798.1 + 14422 0.66 0.926522
Target:  5'- aGGUCcgaacggcauaccgaUCCauugagaccaaaacaACAGGCAcGCCCCCCgGcGGCg -3'
miRNA:   3'- -CCAG---------------AGG---------------UGUUUGU-UGGGGGGaC-CCG- -5'
5478 5' -55.5 NC_001798.1 + 52601 0.66 0.925989
Target:  5'- uGGcCcuggCCGCGuuugacggcgggucGACGGCCCCCgaggUGGGCa -3'
miRNA:   3'- -CCaGa---GGUGU--------------UUGUUGGGGGg---ACCCG- -5'
5478 5' -55.5 NC_001798.1 + 73699 0.66 0.922192
Target:  5'- cGG-C-CCAUAAACAGgCCCCgCUcguggcGGGCg -3'
miRNA:   3'- -CCaGaGGUGUUUGUUgGGGG-GA------CCCG- -5'
5478 5' -55.5 NC_001798.1 + 8403 0.66 0.922192
Target:  5'- gGGUuaCUgCACuuGCccCCCCCCggGGGUg -3'
miRNA:   3'- -CCA--GAgGUGuuUGuuGGGGGGa-CCCG- -5'
5478 5' -55.5 NC_001798.1 + 125117 0.66 0.921641
Target:  5'- aGUCUCCGCGAGacuagaGGCCCggaacgagguuuuCaacaaCUGGGCg -3'
miRNA:   3'- cCAGAGGUGUUUg-----UUGGG-------------Gg----GACCCG- -5'
5478 5' -55.5 NC_001798.1 + 31825 0.66 0.921086
Target:  5'- gGGUCccCCGCGgcaccAACAcccccggugccGCCCCCCacgccgcggaggGGGCg -3'
miRNA:   3'- -CCAGa-GGUGU-----UUGU-----------UGGGGGGa-----------CCCG- -5'
5478 5' -55.5 NC_001798.1 + 19442 0.66 0.916567
Target:  5'- --aUUCC-CGAugAGCCCUCCUGG-Ca -3'
miRNA:   3'- ccaGAGGuGUUugUUGGGGGGACCcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.