miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5480 5' -60.4 NC_001798.1 + 112184 0.66 0.789124
Target:  5'- cCCACG-GGCCGcacGUCCCgCAgGCCGcGCUg -3'
miRNA:   3'- -GGUGUgUCGGC---CAGGG-GUgCGGC-UGG- -5'
5480 5' -60.4 NC_001798.1 + 152604 0.66 0.789124
Target:  5'- gCAUGC-GCCGc-CCCC-CGCCGACg -3'
miRNA:   3'- gGUGUGuCGGCcaGGGGuGCGGCUGg -5'
5480 5' -60.4 NC_001798.1 + 25009 0.66 0.789124
Target:  5'- gUCGcCGCGGCCGacucgcUCgCCGCGCCcGCCu -3'
miRNA:   3'- -GGU-GUGUCGGCc-----AGgGGUGCGGcUGG- -5'
5480 5' -60.4 NC_001798.1 + 70205 0.66 0.789124
Target:  5'- uCCGC-CGGCCGcccUCCCCcucgagcgaGCCGGCg -3'
miRNA:   3'- -GGUGuGUCGGCc--AGGGGug-------CGGCUGg -5'
5480 5' -60.4 NC_001798.1 + 71709 0.66 0.789124
Target:  5'- -gAgACGGCCGaGcgCCgCUucaGCGCCGGCCa -3'
miRNA:   3'- ggUgUGUCGGC-Ca-GG-GG---UGCGGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 115748 0.66 0.789124
Target:  5'- cCCcC-CGGCCGGUCCgggggcauCCAgGCC-ACCu -3'
miRNA:   3'- -GGuGuGUCGGCCAGG--------GGUgCGGcUGG- -5'
5480 5' -60.4 NC_001798.1 + 118452 0.66 0.789124
Target:  5'- cCCACACGGUCGGUgCCC-C-CC-AUCu -3'
miRNA:   3'- -GGUGUGUCGGCCAgGGGuGcGGcUGG- -5'
5480 5' -60.4 NC_001798.1 + 143306 0.66 0.789124
Target:  5'- uCCGCcccCGGCgGGUCgccggCCACGCuCGACg -3'
miRNA:   3'- -GGUGu--GUCGgCCAGg----GGUGCG-GCUGg -5'
5480 5' -60.4 NC_001798.1 + 75934 0.66 0.789124
Target:  5'- cCCGCGgGGUcgacuCGGUCUCgcagCGCGCCgGGCCc -3'
miRNA:   3'- -GGUGUgUCG-----GCCAGGG----GUGCGG-CUGG- -5'
5480 5' -60.4 NC_001798.1 + 7824 0.66 0.789124
Target:  5'- -gGCGCAGCUGGUUcauaCCCAaugGCUucgGGCCa -3'
miRNA:   3'- ggUGUGUCGGCCAG----GGGUg--CGG---CUGG- -5'
5480 5' -60.4 NC_001798.1 + 99345 0.66 0.788253
Target:  5'- aCGCGCGGUCGGUguaCCCGuacgaugaguuugUGCUGGCg -3'
miRNA:   3'- gGUGUGUCGGCCAg--GGGU-------------GCGGCUGg -5'
5480 5' -60.4 NC_001798.1 + 49133 0.66 0.780352
Target:  5'- -gGCuuCAGCgCGGgUCCCGCGCUGugUa -3'
miRNA:   3'- ggUGu-GUCG-GCCaGGGGUGCGGCugG- -5'
5480 5' -60.4 NC_001798.1 + 102645 0.66 0.780352
Target:  5'- gCCGgGCggcggaggGGCCGGggcgCCCgAUGCCGAa- -3'
miRNA:   3'- -GGUgUG--------UCGGCCa---GGGgUGCGGCUgg -5'
5480 5' -60.4 NC_001798.1 + 126741 0.66 0.780352
Target:  5'- uUCGCGCGGCCGca-CCCACGacauccgCGGCUu -3'
miRNA:   3'- -GGUGUGUCGGCcagGGGUGCg------GCUGG- -5'
5480 5' -60.4 NC_001798.1 + 134468 0.66 0.780352
Target:  5'- gCGCGCGGuuGGcgugggcgCgCCugGCCG-CCa -3'
miRNA:   3'- gGUGUGUCggCCa-------GgGGugCGGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 143384 0.66 0.780352
Target:  5'- cCCACGugcgcgucCGGUgCGGUCCCCGCaaUCGACUc -3'
miRNA:   3'- -GGUGU--------GUCG-GCCAGGGGUGc-GGCUGG- -5'
5480 5' -60.4 NC_001798.1 + 4194 0.66 0.780352
Target:  5'- cCCGCccGCGGCgUGGUCUgCgGCGCUGGCg -3'
miRNA:   3'- -GGUG--UGUCG-GCCAGG-GgUGCGGCUGg -5'
5480 5' -60.4 NC_001798.1 + 16198 0.66 0.780352
Target:  5'- aCGCACgGGCCGcccUCCgCaCGCGCCG-CCu -3'
miRNA:   3'- gGUGUG-UCGGCc--AGG-G-GUGCGGCuGG- -5'
5480 5' -60.4 NC_001798.1 + 48415 0.66 0.780352
Target:  5'- cCCGCuCGGCUucccGUCCCCGcCGCCcccucgaguagcGACCc -3'
miRNA:   3'- -GGUGuGUCGGc---CAGGGGU-GCGG------------CUGG- -5'
5480 5' -60.4 NC_001798.1 + 84507 0.66 0.780352
Target:  5'- cCCGgGCGGCCGccguagggcuUCCCCAucccCGCCaucgcGACCg -3'
miRNA:   3'- -GGUgUGUCGGCc---------AGGGGU----GCGG-----CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.