miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5487 5' -55.8 NC_001798.1 + 127295 0.66 0.927581
Target:  5'- aCGCCCUgGGGcagacgcugcUGGAGCUGCugGUUAg- -3'
miRNA:   3'- gGCGGGGgUCC----------ACCUUGGCG--UAAUac -5'
5487 5' -55.8 NC_001798.1 + 102429 0.66 0.927581
Target:  5'- -gGCCUCCAGGggacUGGGGcCCGCGa---- -3'
miRNA:   3'- ggCGGGGGUCC----ACCUU-GGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 48373 0.66 0.927581
Target:  5'- gCCGCCCCgCGGGgcgUGccGCCGCGa---- -3'
miRNA:   3'- -GGCGGGG-GUCC---ACcuUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 9125 0.66 0.927581
Target:  5'- gCCGCCgCgAGGUGGucuGCgGCAc---- -3'
miRNA:   3'- -GGCGGgGgUCCACCu--UGgCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 65681 0.66 0.927581
Target:  5'- aCGCCCC--GGUGGGGCgCGUgcucuguuuGUUGUGc -3'
miRNA:   3'- gGCGGGGguCCACCUUG-GCG---------UAAUAC- -5'
5487 5' -55.8 NC_001798.1 + 98620 0.66 0.927581
Target:  5'- cCCGCgCCUCGGGcGGcguGGCCGCGa---- -3'
miRNA:   3'- -GGCG-GGGGUCCaCC---UUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 102532 0.66 0.927581
Target:  5'- aCCGUCCCCGcGGccGGcaGGCCGCAc---- -3'
miRNA:   3'- -GGCGGGGGU-CCa-CC--UUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 137141 0.66 0.922192
Target:  5'- aCCGCCCCCuggGGGUGacgucAACgCGCAg---- -3'
miRNA:   3'- -GGCGGGGG---UCCACc----UUG-GCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 85397 0.66 0.916567
Target:  5'- aCCGCCCCUGucUGGucuGCCGCAc---- -3'
miRNA:   3'- -GGCGGGGGUccACCu--UGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 97927 0.66 0.916567
Target:  5'- gCGCCaCCAGGUGGAcCCGg------ -3'
miRNA:   3'- gGCGGgGGUCCACCUuGGCguaauac -5'
5487 5' -55.8 NC_001798.1 + 70424 0.66 0.910706
Target:  5'- aCC-UCCCCGGGcugcUGGugcACCGCAUggcgGUGg -3'
miRNA:   3'- -GGcGGGGGUCC----ACCu--UGGCGUAa---UAC- -5'
5487 5' -55.8 NC_001798.1 + 123402 0.66 0.910706
Target:  5'- -gGCCCCCcg--GGAGCCGCGg---- -3'
miRNA:   3'- ggCGGGGGuccaCCUUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 150181 0.66 0.910706
Target:  5'- gCCGCCCCCuccgcggcguGG-GGGGCgGCAc---- -3'
miRNA:   3'- -GGCGGGGGu---------CCaCCUUGgCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 51217 0.66 0.90461
Target:  5'- uCCGCgCCCCAGGUccguuacggccaGGAGCCa------- -3'
miRNA:   3'- -GGCG-GGGGUCCA------------CCUUGGcguaauac -5'
5487 5' -55.8 NC_001798.1 + 91786 0.66 0.902735
Target:  5'- aCGCCCCCugccgaugacgcgcGGGgcgugGGGACCGUg----- -3'
miRNA:   3'- gGCGGGGG--------------UCCa----CCUUGGCGuaauac -5'
5487 5' -55.8 NC_001798.1 + 11433 0.66 0.902106
Target:  5'- aCGCCCCCGGGguuguaaaucuGGCCGCGg---- -3'
miRNA:   3'- gGCGGGGGUCCacc--------UUGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 96823 0.67 0.891723
Target:  5'- cCCGCCgCCuGGcGGA-CCGCAUcUGUa -3'
miRNA:   3'- -GGCGGgGGuCCaCCUuGGCGUA-AUAc -5'
5487 5' -55.8 NC_001798.1 + 138799 0.67 0.891723
Target:  5'- aCGCCCCCAGGc---GCUGCGUc--- -3'
miRNA:   3'- gGCGGGGGUCCaccuUGGCGUAauac -5'
5487 5' -55.8 NC_001798.1 + 2550 0.67 0.891723
Target:  5'- gCgGCCCCCGcGGgagGGGcgGCCGCGg---- -3'
miRNA:   3'- -GgCGGGGGU-CCa--CCU--UGGCGUaauac -5'
5487 5' -55.8 NC_001798.1 + 103071 0.67 0.889711
Target:  5'- gUCGCCgggUCCAGGUGGcgaaacggagcgauGGCCGCGUc--- -3'
miRNA:   3'- -GGCGG---GGGUCCACC--------------UUGGCGUAauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.