miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5490 3' -57.8 NC_001798.1 + 102830 0.66 0.858663
Target:  5'- cGgCGCaggGGCAGACuccgCCCCCCa-- -3'
miRNA:   3'- -CgGUGauaCCGUCUGua--GGGGGGccu -5'
5490 3' -57.8 NC_001798.1 + 139001 0.66 0.858663
Target:  5'- gGCCACcccGGC-GAUAUcgcCCUCCCGGGc -3'
miRNA:   3'- -CGGUGauaCCGuCUGUA---GGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 96163 0.66 0.850975
Target:  5'- cUCGCcAUGGCGG-CcgCgCCCCCGGc -3'
miRNA:   3'- cGGUGaUACCGUCuGuaG-GGGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 106269 0.66 0.850975
Target:  5'- -aCACa--GGUAGACGaccuugUCCCCCGGAg -3'
miRNA:   3'- cgGUGauaCCGUCUGUa-----GGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 25126 0.66 0.843094
Target:  5'- aGCCGC----GCGGACG-CCCCCCGc- -3'
miRNA:   3'- -CGGUGauacCGUCUGUaGGGGGGCcu -5'
5490 3' -57.8 NC_001798.1 + 147171 0.66 0.843094
Target:  5'- aGCCGCccggcgccgGGCggaAGGCGUCCCccgCCCGGc -3'
miRNA:   3'- -CGGUGaua------CCG---UCUGUAGGG---GGGCCu -5'
5490 3' -57.8 NC_001798.1 + 5498 0.66 0.842295
Target:  5'- cGUCGCg--GGCGGGCucgcUCCCCugcccuuCCGGGu -3'
miRNA:   3'- -CGGUGauaCCGUCUGu---AGGGG-------GGCCU- -5'
5490 3' -57.8 NC_001798.1 + 115718 0.66 0.835026
Target:  5'- gGCCgacgucgaGCUucccGGCGGcgaaGUCCCCCCGGc -3'
miRNA:   3'- -CGG--------UGAua--CCGUCug--UAGGGGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 4113 0.66 0.834209
Target:  5'- gGCC-CUG-GGCGGGC-UCggccggggcgccgCCCCCGGGg -3'
miRNA:   3'- -CGGuGAUaCCGUCUGuAG-------------GGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 123112 0.66 0.826778
Target:  5'- cGCCGCcucugcgGGCuAGugGUCUUUCCGGGa -3'
miRNA:   3'- -CGGUGaua----CCG-UCugUAGGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 114063 0.66 0.826778
Target:  5'- gGCCGCUccuGCccGCGaCCCCCCGGGu -3'
miRNA:   3'- -CGGUGAuacCGucUGUaGGGGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 25091 0.66 0.826778
Target:  5'- cGCCGCcg-GGCGGcgccccGCG-CCCCCCGa- -3'
miRNA:   3'- -CGGUGauaCCGUC------UGUaGGGGGGCcu -5'
5490 3' -57.8 NC_001798.1 + 129017 0.66 0.826778
Target:  5'- cGCCGCc--GGCgaaaaaAGGCGaugcUCCgCCCCGGAu -3'
miRNA:   3'- -CGGUGauaCCG------UCUGU----AGG-GGGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 74800 0.66 0.825108
Target:  5'- cGCCGCcccgcccccGCAGACA-CCCgCCGGGg -3'
miRNA:   3'- -CGGUGauac-----CGUCUGUaGGGgGGCCU- -5'
5490 3' -57.8 NC_001798.1 + 93148 0.66 0.818359
Target:  5'- gGCCuCggugAUGGCGGGCGacgCCgCCCUGGc -3'
miRNA:   3'- -CGGuGa---UACCGUCUGUa--GG-GGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 47612 0.66 0.818359
Target:  5'- aGCUguACUAUGGCccg-GUCUCCCCGGc -3'
miRNA:   3'- -CGG--UGAUACCGucugUAGGGGGGCCu -5'
5490 3' -57.8 NC_001798.1 + 149555 0.66 0.816655
Target:  5'- uCCAUguccaggacgGGCAGGCAgUCCCCCGuGAc -3'
miRNA:   3'- cGGUGaua-------CCGUCUGUaGGGGGGC-CU- -5'
5490 3' -57.8 NC_001798.1 + 154478 0.67 0.808907
Target:  5'- gGCCGCUcccccGCGGGCGccgccccUCCCCCCGc- -3'
miRNA:   3'- -CGGUGAuac--CGUCUGU-------AGGGGGGCcu -5'
5490 3' -57.8 NC_001798.1 + 140 0.67 0.808907
Target:  5'- gGCCGCUcccccGCGGGCGccgccccUCCCCCCGc- -3'
miRNA:   3'- -CGGUGAuac--CGUCUGU-------AGGGGGGCcu -5'
5490 3' -57.8 NC_001798.1 + 7871 0.67 0.801033
Target:  5'- cGCCGCUGUGGCccuggcGGACggCCgCCauGAa -3'
miRNA:   3'- -CGGUGAUACCG------UCUGuaGGgGGgcCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.