miRNA display CGI


Results 1 - 20 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5491 3' -63.6 NC_001798.1 + 79451 0.66 0.602038
Target:  5'- cGCCCgGGCcucuucuucccccgAGgGCCAcgaggucgacccgcaGCUG-CUGCGCCg -3'
miRNA:   3'- -CGGG-CCG--------------UCgCGGU---------------UGGCgGACGCGG- -5'
5491 3' -63.6 NC_001798.1 + 85685 0.66 0.602038
Target:  5'- uGCCCGG--GCGCCAcGCCcagaagcaacccagGCCgacgcccuccccggGCGCCg -3'
miRNA:   3'- -CGGGCCguCGCGGU-UGG--------------CGGa-------------CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 28596 0.66 0.601069
Target:  5'- gGCCUGGgAGacgGCC-GCgCGCCUG-GCCc -3'
miRNA:   3'- -CGGGCCgUCg--CGGuUG-GCGGACgCGG- -5'
5491 3' -63.6 NC_001798.1 + 134370 0.66 0.601069
Target:  5'- ---gGGCc-CGCCGGCCGCUccucGCGCCg -3'
miRNA:   3'- cgggCCGucGCGGUUGGCGGa---CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 146453 0.66 0.601069
Target:  5'- aGCCC-GCGGC-CgCAGCCGagCaGCGCCg -3'
miRNA:   3'- -CGGGcCGUCGcG-GUUGGCg-GaCGCGG- -5'
5491 3' -63.6 NC_001798.1 + 75556 0.66 0.601069
Target:  5'- aGCCUGGCGGaCGUgG-CCGCCcaccgGCcCCu -3'
miRNA:   3'- -CGGGCCGUC-GCGgUuGGCGGa----CGcGG- -5'
5491 3' -63.6 NC_001798.1 + 75932 0.66 0.601069
Target:  5'- cGCCC-GCGGgGUCGACUcgGUCUcgcagcGCGCCg -3'
miRNA:   3'- -CGGGcCGUCgCGGUUGG--CGGA------CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 105222 0.66 0.601069
Target:  5'- uGCCCcguccGCAGCGCCcucCCcCCU-CGCCu -3'
miRNA:   3'- -CGGGc----CGUCGCGGuu-GGcGGAcGCGG- -5'
5491 3' -63.6 NC_001798.1 + 127492 0.66 0.601069
Target:  5'- gGCCUGGCGuaugacGUGCCGgaggGCauCCgGCGCCa -3'
miRNA:   3'- -CGGGCCGU------CGCGGU----UGgcGGaCGCGG- -5'
5491 3' -63.6 NC_001798.1 + 131071 0.66 0.601069
Target:  5'- cGCCCaccGCGGCGUacaCGGCCGCCgccagcaacaGCGUa -3'
miRNA:   3'- -CGGGc--CGUCGCG---GUUGGCGGa---------CGCGg -5'
5491 3' -63.6 NC_001798.1 + 152635 0.66 0.601069
Target:  5'- aGUCCcccCGGCGCC--CCGCCgGCGCg -3'
miRNA:   3'- -CGGGcc-GUCGCGGuuGGCGGaCGCGg -5'
5491 3' -63.6 NC_001798.1 + 4904 0.66 0.601069
Target:  5'- aUCCGGgGcCGCCggUCGUCUcCGCCg -3'
miRNA:   3'- cGGGCCgUcGCGGuuGGCGGAcGCGG- -5'
5491 3' -63.6 NC_001798.1 + 123406 0.66 0.601069
Target:  5'- cCCCGGgAGCcgcgGCC--CCGCCgggucaccgggGCGCCc -3'
miRNA:   3'- cGGGCCgUCG----CGGuuGGCGGa----------CGCGG- -5'
5491 3' -63.6 NC_001798.1 + 116422 0.66 0.6001
Target:  5'- gGCCCGcGCGGCcgacgccgccgacGaCCGGCCGCaccgGCcgGCCg -3'
miRNA:   3'- -CGGGC-CGUCG-------------C-GGUUGGCGga--CG--CGG- -5'
5491 3' -63.6 NC_001798.1 + 88752 0.66 0.6001
Target:  5'- -aCCGGgGGCgcgcauGCCGGCCGCCUccggaaaGUcgGCCa -3'
miRNA:   3'- cgGGCCgUCG------CGGUUGGCGGA-------CG--CGG- -5'
5491 3' -63.6 NC_001798.1 + 88191 0.66 0.598164
Target:  5'- cGCgCGGCGG-GCCAugagcuuguaauacACCGUCaggUGgGCCa -3'
miRNA:   3'- -CGgGCCGUCgCGGU--------------UGGCGG---ACgCGG- -5'
5491 3' -63.6 NC_001798.1 + 131545 0.66 0.591392
Target:  5'- uCCCGGacgcgAGCGCCccGACgGCCcgGUGCg -3'
miRNA:   3'- cGGGCCg----UCGCGG--UUGgCGGa-CGCGg -5'
5491 3' -63.6 NC_001798.1 + 87464 0.66 0.591392
Target:  5'- cCCCGGCA-CGUCGGCCcaCCUGCaCUa -3'
miRNA:   3'- cGGGCCGUcGCGGUUGGc-GGACGcGG- -5'
5491 3' -63.6 NC_001798.1 + 77174 0.66 0.591392
Target:  5'- -gCCGGgAGCGCCG-CCGUC-GCGaCg -3'
miRNA:   3'- cgGGCCgUCGCGGUuGGCGGaCGCgG- -5'
5491 3' -63.6 NC_001798.1 + 72444 0.66 0.591392
Target:  5'- -gCCGGUucgagAGCGaCGggcACCGCCUGUacGCCg -3'
miRNA:   3'- cgGGCCG-----UCGCgGU---UGGCGGACG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.