miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5492 3' -63.2 NC_001798.1 + 31569 0.66 0.624146
Target:  5'- uCGGGGcgcGCCGCGcg-CCCCCGcgcggccgucgcCCCGCGc -3'
miRNA:   3'- -GUCCC---CGGUGCcaaGGGGGU------------GGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 84868 0.66 0.618323
Target:  5'- gCGGGGGUCauguccucgaaccagACGGccgcgUCCCCCGCgCCGu- -3'
miRNA:   3'- -GUCCCCGG---------------UGCCa----AGGGGGUG-GGUgc -5'
5492 3' -63.2 NC_001798.1 + 27252 0.66 0.614443
Target:  5'- gAGGcGGCCGCGGgaccgcagCCCCgugGCgCGCGg -3'
miRNA:   3'- gUCC-CCGGUGCCaa------GGGGg--UGgGUGC- -5'
5492 3' -63.2 NC_001798.1 + 76603 0.66 0.614443
Target:  5'- aCGGGGGCg--GGcugUCCCCCGaggCCACGc -3'
miRNA:   3'- -GUCCCCGgugCCa--AGGGGGUg--GGUGC- -5'
5492 3' -63.2 NC_001798.1 + 91579 0.66 0.614443
Target:  5'- gGGGGcGCCGCGGUUUcuuuuuaucggCCCgGCaggCCGCGc -3'
miRNA:   3'- gUCCC-CGGUGCCAAG-----------GGGgUG---GGUGC- -5'
5492 3' -63.2 NC_001798.1 + 61689 0.66 0.614443
Target:  5'- -cGGGGCCAaGGcgaUCCUgGCCCGCa -3'
miRNA:   3'- guCCCCGGUgCCaa-GGGGgUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 82068 0.66 0.614443
Target:  5'- -cGGGGCCccGCGGccggCCCACCC-CGg -3'
miRNA:   3'- guCCCCGG--UGCCaaggGGGUGGGuGC- -5'
5492 3' -63.2 NC_001798.1 + 32027 0.66 0.613473
Target:  5'- uCGGGcgaccgcGGCCACGGgccgcUCgCCCCGgcgUCCGCGg -3'
miRNA:   3'- -GUCC-------CCGGUGCCa----AG-GGGGU---GGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 77853 0.66 0.613473
Target:  5'- gCAGGcgcucgcGGCCaacgccgagGCGGUcaCCCUCGCCCugGa -3'
miRNA:   3'- -GUCC-------CCGG---------UGCCAa-GGGGGUGGGugC- -5'
5492 3' -63.2 NC_001798.1 + 34883 0.66 0.604752
Target:  5'- cCGGGcGGCUAccCGGgaCCCCCGgCCGgGa -3'
miRNA:   3'- -GUCC-CCGGU--GCCaaGGGGGUgGGUgC- -5'
5492 3' -63.2 NC_001798.1 + 43518 0.66 0.595079
Target:  5'- gCAGGuaGGCgGCGGccgcgUCUCCCGCCaggGCGg -3'
miRNA:   3'- -GUCC--CCGgUGCCa----AGGGGGUGGg--UGC- -5'
5492 3' -63.2 NC_001798.1 + 7408 0.66 0.595079
Target:  5'- cCAGGGacCCGCGa--CCCCCAcgaccCCCACGg -3'
miRNA:   3'- -GUCCCc-GGUGCcaaGGGGGU-----GGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 61325 0.66 0.595079
Target:  5'- aCAGGGGCgGCGGgcuugggugUCCCggaccgucaCACCUAUa -3'
miRNA:   3'- -GUCCCCGgUGCCa--------AGGGg--------GUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 115319 0.66 0.595079
Target:  5'- -cGGGGaCC-UGGUgcccgCCCCCGgCCACc -3'
miRNA:   3'- guCCCC-GGuGCCAa----GGGGGUgGGUGc -5'
5492 3' -63.2 NC_001798.1 + 137304 0.66 0.595079
Target:  5'- gAGGauGGCgGCGGccgUUCCCUCAUCgGCGg -3'
miRNA:   3'- gUCC--CCGgUGCC---AAGGGGGUGGgUGC- -5'
5492 3' -63.2 NC_001798.1 + 29950 0.66 0.585431
Target:  5'- -cGGGGCCGac---CCCCgGCCCGCu -3'
miRNA:   3'- guCCCCGGUgccaaGGGGgUGGGUGc -5'
5492 3' -63.2 NC_001798.1 + 150971 0.66 0.585431
Target:  5'- -cGGGaGCCccCGGUUagugcccgaCCCCCGCCCGa- -3'
miRNA:   3'- guCCC-CGGu-GCCAA---------GGGGGUGGGUgc -5'
5492 3' -63.2 NC_001798.1 + 28359 0.66 0.585431
Target:  5'- -cGGcGGCCcccCGcg-UCCCCGCCCGCGg -3'
miRNA:   3'- guCC-CCGGu--GCcaaGGGGGUGGGUGC- -5'
5492 3' -63.2 NC_001798.1 + 2854 0.66 0.585431
Target:  5'- -cGGcGGCCACGGcggCCUCgCugCCGCc -3'
miRNA:   3'- guCC-CCGGUGCCaa-GGGG-GugGGUGc -5'
5492 3' -63.2 NC_001798.1 + 42633 0.66 0.584468
Target:  5'- aGGGGGCCgugggucguguccAUGGgguccgugUCCUCCuCCCACu -3'
miRNA:   3'- gUCCCCGG-------------UGCCa-------AGGGGGuGGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.