miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5493 5' -56.2 NC_001798.1 + 79367 0.66 0.906704
Target:  5'- cGcCAGG-GCCGGcggccAGACGgGCGcGGGCg -3'
miRNA:   3'- aC-GUCCuCGGCU-----UUUGUgCGUcCCCG- -5'
5493 5' -56.2 NC_001798.1 + 75346 0.66 0.906704
Target:  5'- cUGCGGucGCCGu--ACccgGCGCAcccGGGGCu -3'
miRNA:   3'- -ACGUCcuCGGCuuuUG---UGCGU---CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 68110 0.66 0.906704
Target:  5'- cGCAcGGGGCCGcgcacggccAAGACG-GCGaGGGCg -3'
miRNA:   3'- aCGU-CCUCGGC---------UUUUGUgCGUcCCCG- -5'
5493 5' -56.2 NC_001798.1 + 60293 0.66 0.906704
Target:  5'- uUGCcguuGGGGCCGAGcucgaACGUGGuGGGUu -3'
miRNA:   3'- -ACGu---CCUCGGCUUuug--UGCGUC-CCCG- -5'
5493 5' -56.2 NC_001798.1 + 106740 0.66 0.906704
Target:  5'- cGCcaGGGGGCCuccGGAGCcCGCGGGGa- -3'
miRNA:   3'- aCG--UCCUCGGc--UUUUGuGCGUCCCcg -5'
5493 5' -56.2 NC_001798.1 + 106203 0.66 0.906704
Target:  5'- uUGCGGGAcgaGCCGGGucacgcggcuGACGCGCAGcGuacGCu -3'
miRNA:   3'- -ACGUCCU---CGGCUU----------UUGUGCGUC-Cc--CG- -5'
5493 5' -56.2 NC_001798.1 + 33462 0.66 0.904841
Target:  5'- aGcCAGGGGCCagggaacuuugauaGAgaggggggaaAGugGgGCGGGGGCg -3'
miRNA:   3'- aC-GUCCUCGG--------------CU----------UUugUgCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 135964 0.66 0.902956
Target:  5'- cGC-GGAGCaauacuGGAGACGCGuCgugcgcguaugucccGGGGGCg -3'
miRNA:   3'- aCGuCCUCGg-----CUUUUGUGC-G---------------UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 48640 0.66 0.902956
Target:  5'- gGgAGGGGCgGGAggaagGACACGCcucccuuccgagcgcGGGGGa -3'
miRNA:   3'- aCgUCCUCGgCUU-----UUGUGCG---------------UCCCCg -5'
5493 5' -56.2 NC_001798.1 + 7800 0.66 0.900409
Target:  5'- gGCGGGAGCCaGGgucggacaGGAgGCGCAGcuGGUu -3'
miRNA:   3'- aCGUCCUCGG-CU--------UUUgUGCGUCc-CCG- -5'
5493 5' -56.2 NC_001798.1 + 66376 0.66 0.900409
Target:  5'- gGCGGGcGGaCCGcc-GCAC-CAGGGGUu -3'
miRNA:   3'- aCGUCC-UC-GGCuuuUGUGcGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 95693 0.66 0.900409
Target:  5'- gGCGGGGGCgGccGGCGuCGCccgaaAGcGGGCg -3'
miRNA:   3'- aCGUCCUCGgCuuUUGU-GCG-----UC-CCCG- -5'
5493 5' -56.2 NC_001798.1 + 122111 0.66 0.900409
Target:  5'- gGCGGGGGgCGcuuugccAGC-CGgGGGGGCc -3'
miRNA:   3'- aCGUCCUCgGCuu-----UUGuGCgUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 5999 0.66 0.900409
Target:  5'- cGCGgcGGAGaCCGGGAcggcagcggcgGCAuCGCgaaGGGGGCc -3'
miRNA:   3'- aCGU--CCUC-GGCUUU-----------UGU-GCG---UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 100716 0.66 0.900409
Target:  5'- cGCGGG-GCUGu--GCGCGUucuucgAGGGGa -3'
miRNA:   3'- aCGUCCuCGGCuuuUGUGCG------UCCCCg -5'
5493 5' -56.2 NC_001798.1 + 149245 0.66 0.900409
Target:  5'- cGCGGGGGCguCGccGGCcgGCGCGGGcGCg -3'
miRNA:   3'- aCGUCCUCG--GCuuUUG--UGCGUCCcCG- -5'
5493 5' -56.2 NC_001798.1 + 46183 0.66 0.899767
Target:  5'- aGCAGGccucugguccgucGGCCGcgcgcAAUACGCGGaGGGa -3'
miRNA:   3'- aCGUCC-------------UCGGCuu---UUGUGCGUC-CCCg -5'
5493 5' -56.2 NC_001798.1 + 5896 0.66 0.899767
Target:  5'- cGCGGGcuCCGccccGAGGCGgGCccggacgGGGGGCg -3'
miRNA:   3'- aCGUCCucGGC----UUUUGUgCG-------UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 4597 0.66 0.898475
Target:  5'- gGCgAGcGGGCCGcuucuucuuGCGCGCcgucgcgcuccgggGGGGGCg -3'
miRNA:   3'- aCG-UC-CUCGGCuuu------UGUGCG--------------UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 84707 0.66 0.89652
Target:  5'- aGCAGcucGCCGugcacGCACGCGguguccugcguauguGGGGCg -3'
miRNA:   3'- aCGUCcu-CGGCuuu--UGUGCGU---------------CCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.