miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 3' -59.7 NC_001798.1 + 35006 0.65 0.805568
Target:  5'- gGGGCGcACCucggcgGCCAagccccggcccgcCCGGGGgUCCCc- -3'
miRNA:   3'- -CCCGCuUGG------UGGU-------------GGCCCCaAGGGuc -5'
5494 3' -59.7 NC_001798.1 + 123409 0.65 0.805568
Target:  5'- cGG-GAGCCGCggccccgccggguCACCGGGGcgCCCc- -3'
miRNA:   3'- cCCgCUUGGUG-------------GUGGCCCCaaGGGuc -5'
5494 3' -59.7 NC_001798.1 + 106097 0.66 0.797817
Target:  5'- cGGCGAcccggcgccGCgACCGCCGGGucugcggUUCCGGc -3'
miRNA:   3'- cCCGCU---------UGgUGGUGGCCCca-----AGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 28992 0.66 0.797817
Target:  5'- gGGGCGGcgccggccaaccGCgCGCCGCCGcGcGggCCCGGa -3'
miRNA:   3'- -CCCGCU------------UG-GUGGUGGC-CcCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 5898 0.66 0.797817
Target:  5'- cGGGCu--CCGCC-CCGaGGcGggCCCGGa -3'
miRNA:   3'- -CCCGcuuGGUGGuGGC-CC-CaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 120337 0.66 0.797817
Target:  5'- -uGCGAAaCGCC-CCGGGGUgcagCgCCAGc -3'
miRNA:   3'- ccCGCUUgGUGGuGGCCCCAa---G-GGUC- -5'
5494 3' -59.7 NC_001798.1 + 48383 0.66 0.797817
Target:  5'- gGGGCGuGCCGCCgcgACCGcacGGGccCCCGc -3'
miRNA:   3'- -CCCGCuUGGUGG---UGGC---CCCaaGGGUc -5'
5494 3' -59.7 NC_001798.1 + 15920 0.66 0.797817
Target:  5'- gGGGCGuacgGACCgucaucuaggGCC-CCGGGGg-CCCAa -3'
miRNA:   3'- -CCCGC----UUGG----------UGGuGGCCCCaaGGGUc -5'
5494 3' -59.7 NC_001798.1 + 15827 0.66 0.797817
Target:  5'- aGGC--GCCGCCcgguUCGGGGggCCCGa -3'
miRNA:   3'- cCCGcuUGGUGGu---GGCCCCaaGGGUc -5'
5494 3' -59.7 NC_001798.1 + 59753 0.66 0.797817
Target:  5'- gGGGUGccuCCGCUugguucCCGGcGGUUCCgGGa -3'
miRNA:   3'- -CCCGCuu-GGUGGu-----GGCC-CCAAGGgUC- -5'
5494 3' -59.7 NC_001798.1 + 19717 0.66 0.789073
Target:  5'- uGGCaAACaCACCggGCUGGGGgUCCCGc -3'
miRNA:   3'- cCCGcUUG-GUGG--UGGCCCCaAGGGUc -5'
5494 3' -59.7 NC_001798.1 + 2610 0.66 0.789073
Target:  5'- gGGcGCGGGgCGCCGcCCGGcGGcgCCCuGg -3'
miRNA:   3'- -CC-CGCUUgGUGGU-GGCC-CCaaGGGuC- -5'
5494 3' -59.7 NC_001798.1 + 97476 0.66 0.789073
Target:  5'- gGGGCcGGCggCGCgACCGGGGgggCCgAGg -3'
miRNA:   3'- -CCCGcUUG--GUGgUGGCCCCaa-GGgUC- -5'
5494 3' -59.7 NC_001798.1 + 147227 0.66 0.789073
Target:  5'- cGGCGGAgCgcggggGCC-CCGGGGc-CCCGGg -3'
miRNA:   3'- cCCGCUUgG------UGGuGGCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 9118 0.66 0.789073
Target:  5'- cGGGgGAGCCGCCGCgaGGuGGUcUgCGGc -3'
miRNA:   3'- -CCCgCUUGGUGGUGg-CC-CCAaGgGUC- -5'
5494 3' -59.7 NC_001798.1 + 22356 0.66 0.786423
Target:  5'- gGGGCgGGGCCGcgcauaaugcgguuCCACCuGGGGgcggaacCCCGGc -3'
miRNA:   3'- -CCCG-CUUGGU--------------GGUGG-CCCCaa-----GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 127851 0.66 0.785537
Target:  5'- uGGGCcccgccccgccCCACCccgccccacgucACCGGGGgcCCCGGg -3'
miRNA:   3'- -CCCGcuu--------GGUGG------------UGGCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 5928 0.66 0.783762
Target:  5'- gGGGCGGGCCGuuCCucgcgcacauaaaggGCCGGcg-UCCCGGu -3'
miRNA:   3'- -CCCGCUUGGU--GG---------------UGGCCccaAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 128878 0.66 0.780197
Target:  5'- uGGCGcGGCgAUCGCCGGaGGcgUUCCGGg -3'
miRNA:   3'- cCCGC-UUGgUGGUGGCC-CCa-AGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 73953 0.66 0.780197
Target:  5'- gGGGCGAguggacGCgCGCgGCCGcGGGcUCCgGGc -3'
miRNA:   3'- -CCCGCU------UG-GUGgUGGC-CCCaAGGgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.