miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 5' -56.6 NC_001798.1 + 30775 0.66 0.892801
Target:  5'- cGGCCGugcGGG-CCGGCAcgGCCGuGGa- -3'
miRNA:   3'- -CCGGU---CCUaGGCCGUaaCGGCuUCgu -5'
5494 5' -56.6 NC_001798.1 + 8881 0.66 0.892801
Target:  5'- cGGaaGGGcgCUGGCGgaggGCgGAGGCGa -3'
miRNA:   3'- -CCggUCCuaGGCCGUaa--CGgCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 8789 0.66 0.892801
Target:  5'- uGCCGGGA-CgGGCGagGCCGcgGGGUAa -3'
miRNA:   3'- cCGGUCCUaGgCCGUaaCGGC--UUCGU- -5'
5494 5' -56.6 NC_001798.1 + 59476 0.66 0.892801
Target:  5'- cGGUgAGGcGUUCGGCcaccacccGUUGCCGucagGGCAa -3'
miRNA:   3'- -CCGgUCC-UAGGCCG--------UAACGGCu---UCGU- -5'
5494 5' -56.6 NC_001798.1 + 83839 0.66 0.890793
Target:  5'- gGGCCGguccccguccgggcGGcgCUGGCGggcCCGAGGCGg -3'
miRNA:   3'- -CCGGU--------------CCuaGGCCGUaacGGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 43011 0.66 0.886029
Target:  5'- cGGCCAGGccgcCCGGgGggaGCgCGggGCc -3'
miRNA:   3'- -CCGGUCCua--GGCCgUaa-CG-GCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 135229 0.66 0.886029
Target:  5'- aGGCCGGGcugCCGGaa--GCCcgGggGCGg -3'
miRNA:   3'- -CCGGUCCua-GGCCguaaCGG--CuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 46765 0.66 0.886029
Target:  5'- cGGCCcauucGGAgucCCcGCAUucUGCCGggGUAa -3'
miRNA:   3'- -CCGGu----CCUa--GGcCGUA--ACGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 105386 0.66 0.885339
Target:  5'- cGGCCuGGAgggCGGCGUUcuccaggGCCGccGCGg -3'
miRNA:   3'- -CCGGuCCUag-GCCGUAA-------CGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 2125 0.66 0.879032
Target:  5'- cGGCCAGGuccucgcCCGGCAgcGgCG-AGUAg -3'
miRNA:   3'- -CCGGUCCua-----GGCCGUaaCgGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 111022 0.66 0.879032
Target:  5'- cGGCCAGGcGUCCGug---GCCGgcGUAc -3'
miRNA:   3'- -CCGGUCC-UAGGCcguaaCGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 36480 0.66 0.877606
Target:  5'- cGCCGGGAgggggcgCCGGCGcgacgcgggcgGCCG-GGCGg -3'
miRNA:   3'- cCGGUCCUa------GGCCGUaa---------CGGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 24649 0.66 0.871816
Target:  5'- gGGCUucgacGGcGAcCUGGCGgccgUGCCGggGCu -3'
miRNA:   3'- -CCGG-----UC-CUaGGCCGUa---ACGGCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 88034 0.66 0.871816
Target:  5'- uGGCCGGGGag-GGCAggGCCGcuggggGGGCGg -3'
miRNA:   3'- -CCGGUCCUaggCCGUaaCGGC------UUCGU- -5'
5494 5' -56.6 NC_001798.1 + 64514 0.66 0.871816
Target:  5'- uGGgCGGGGUCCaggcaaGGCAggGCCuGGGCc -3'
miRNA:   3'- -CCgGUCCUAGG------CCGUaaCGGcUUCGu -5'
5494 5' -56.6 NC_001798.1 + 56249 0.66 0.871816
Target:  5'- cGGCCGGGc-CCGGCc---CCGGAGUu -3'
miRNA:   3'- -CCGGUCCuaGGCCGuaacGGCUUCGu -5'
5494 5' -56.6 NC_001798.1 + 12326 0.66 0.871816
Target:  5'- cGGCCGGGcAUaCCGGgAUcggacggGUCGAGGUg -3'
miRNA:   3'- -CCGGUCC-UA-GGCCgUAa------CGGCUUCGu -5'
5494 5' -56.6 NC_001798.1 + 4889 0.66 0.871816
Target:  5'- cGGCU-GGAUCCGGagau-CCGggGCc -3'
miRNA:   3'- -CCGGuCCUAGGCCguaacGGCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 126263 0.66 0.864385
Target:  5'- cGCCGGGcGUCCGGac--GCCcAAGCGg -3'
miRNA:   3'- cCGGUCC-UAGGCCguaaCGGcUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 76850 0.66 0.864385
Target:  5'- gGGCUaaAGGcguGUCCGGCcgUGCU--GGCGa -3'
miRNA:   3'- -CCGG--UCC---UAGGCCGuaACGGcuUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.