miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 5' -56.6 NC_001798.1 + 147026 0.71 0.610465
Target:  5'- gGGCCGGGGcUUGGCc--GCCGAGGUg -3'
miRNA:   3'- -CCGGUCCUaGGCCGuaaCGGCUUCGu -5'
5494 5' -56.6 NC_001798.1 + 27934 0.71 0.630918
Target:  5'- cGCCGGGGUcCCGGCGccgGCCGcgccccGGCGc -3'
miRNA:   3'- cCGGUCCUA-GGCCGUaa-CGGCu-----UCGU- -5'
5494 5' -56.6 NC_001798.1 + 97470 0.71 0.601278
Target:  5'- cGGCUGGGggCCGGCGgcgcgaccggggggGCCGAGGa- -3'
miRNA:   3'- -CCGGUCCuaGGCCGUaa------------CGGCUUCgu -5'
5494 5' -56.6 NC_001798.1 + 97600 0.7 0.671769
Target:  5'- gGGCgCAGGggCCGGaga-GCUGggGCGa -3'
miRNA:   3'- -CCG-GUCCuaGGCCguaaCGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 31048 0.7 0.681923
Target:  5'- gGGCgGGGGUCgGGCGgggGUCG-GGCAc -3'
miRNA:   3'- -CCGgUCCUAGgCCGUaa-CGGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 108115 0.7 0.668717
Target:  5'- cGGUCuguggguggugaugGGGGUCCuggugGGCGUUGCCGggGg- -3'
miRNA:   3'- -CCGG--------------UCCUAGG-----CCGUAACGGCuuCgu -5'
5494 5' -56.6 NC_001798.1 + 6387 0.7 0.651374
Target:  5'- gGGCCGGGGggCCGGggg-GCCGggGgGa -3'
miRNA:   3'- -CCGGUCCUa-GGCCguaaCGGCuuCgU- -5'
5494 5' -56.6 NC_001798.1 + 24897 0.7 0.651374
Target:  5'- gGGCCcuGGGcCCGGCGcUGCCGcgGAGCc -3'
miRNA:   3'- -CCGGu-CCUaGGCCGUaACGGC--UUCGu -5'
5494 5' -56.6 NC_001798.1 + 37191 0.7 0.65546
Target:  5'- cGCCAGGcgCCGcgccgaacgacgggcGCGgcGCCGGAGCu -3'
miRNA:   3'- cCGGUCCuaGGC---------------CGUaaCGGCUUCGu -5'
5494 5' -56.6 NC_001798.1 + 58120 0.69 0.740695
Target:  5'- gGGCCcggcgucuGGGUCCuugugaaGGCGgcGCCGGAGCc -3'
miRNA:   3'- -CCGGu-------CCUAGG-------CCGUaaCGGCUUCGu -5'
5494 5' -56.6 NC_001798.1 + 4112 0.69 0.741668
Target:  5'- cGGCCcuGGG-CgGGCucgGCCGggGCGc -3'
miRNA:   3'- -CCGGu-CCUaGgCCGuaaCGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 102214 0.69 0.751344
Target:  5'- cGCCGGGAgucgaCCgGGCGcgGCuCGggGCGg -3'
miRNA:   3'- cCGGUCCUa----GG-CCGUaaCG-GCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 95692 0.69 0.702098
Target:  5'- cGGCgGGGGcggCCGGCGUcGCCcGaAAGCGg -3'
miRNA:   3'- -CCGgUCCUa--GGCCGUAaCGG-C-UUCGU- -5'
5494 5' -56.6 NC_001798.1 + 102644 0.69 0.741668
Target:  5'- cGCCGGG---CGGCGgagggGCCGggGCGc -3'
miRNA:   3'- cCGGUCCuagGCCGUaa---CGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 41090 0.69 0.751344
Target:  5'- -aCCAGGGUCUGGCGUUGaaCGGauAGCu -3'
miRNA:   3'- ccGGUCCUAGGCCGUAACg-GCU--UCGu -5'
5494 5' -56.6 NC_001798.1 + 119881 0.69 0.712102
Target:  5'- aGGCCGGGGggaucCCGGuCGggGCCGccAGGUAa -3'
miRNA:   3'- -CCGGUCCUa----GGCC-GUaaCGGC--UUCGU- -5'
5494 5' -56.6 NC_001798.1 + 6306 0.69 0.751344
Target:  5'- gGGCCGGGGggacgggCCGGgGggacggGCCGggGgGa -3'
miRNA:   3'- -CCGGUCCUa------GGCCgUaa----CGGCuuCgU- -5'
5494 5' -56.6 NC_001798.1 + 6267 0.69 0.751344
Target:  5'- gGGCCGGGGggacgggCCGGgGggacggGCCGggGgGa -3'
miRNA:   3'- -CCGGUCCUa------GGCCgUaa----CGGCuuCgU- -5'
5494 5' -56.6 NC_001798.1 + 39870 0.69 0.751344
Target:  5'- aGGCUucgGGGGUgCCGGCGUccUCGggGCGg -3'
miRNA:   3'- -CCGG---UCCUA-GGCCGUAacGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 22131 0.69 0.741668
Target:  5'- cGGCCccuuuGGggCCGGCGgggGCCaacgGGAGCGc -3'
miRNA:   3'- -CCGGu----CCuaGGCCGUaa-CGG----CUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.