miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5495 5' -55.7 NC_001798.1 + 93537 0.74 0.499024
Target:  5'- aGGagUUCgCCGGCGAGCACCUg---- -3'
miRNA:   3'- gCCggAAG-GGCCGCUCGUGGAaaaua -5'
5495 5' -55.7 NC_001798.1 + 91867 0.69 0.742787
Target:  5'- cCGGCCgcCCCGGCcGAGCAUa------ -3'
miRNA:   3'- -GCCGGaaGGGCCG-CUCGUGgaaaaua -5'
5495 5' -55.7 NC_001798.1 + 86854 0.66 0.90778
Target:  5'- cCGGCCgcgacaagaCCCGGCGGcggucGCGCUUUUc-- -3'
miRNA:   3'- -GCCGGaa-------GGGCCGCU-----CGUGGAAAaua -5'
5495 5' -55.7 NC_001798.1 + 80735 0.66 0.904026
Target:  5'- aCGGCCUUCuCCcGCGAGUcggaacuggaacuguGCCUg---- -3'
miRNA:   3'- -GCCGGAAG-GGcCGCUCG---------------UGGAaaaua -5'
5495 5' -55.7 NC_001798.1 + 79066 0.68 0.834542
Target:  5'- gGGCCcagCCGGCcuacGAGCGCCUUUc-- -3'
miRNA:   3'- gCCGGaagGGCCG----CUCGUGGAAAaua -5'
5495 5' -55.7 NC_001798.1 + 78962 0.73 0.52861
Target:  5'- uGGCCgcgUCCgGGgGGGCGCCUg---- -3'
miRNA:   3'- gCCGGa--AGGgCCgCUCGUGGAaaaua -5'
5495 5' -55.7 NC_001798.1 + 78558 0.66 0.910234
Target:  5'- gGGCCUgcgggaggcgcuggCCgCGcGCGAGCGCCg----- -3'
miRNA:   3'- gCCGGAa-------------GG-GC-CGCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 76563 0.75 0.415253
Target:  5'- gCGGCCUucgUCCCGGCGAccggccccGCGCCg----- -3'
miRNA:   3'- -GCCGGA---AGGGCCGCU--------CGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 70318 0.66 0.901475
Target:  5'- gCGGUCggCCCGGCGgaGGCGCg------ -3'
miRNA:   3'- -GCCGGaaGGGCCGC--UCGUGgaaaaua -5'
5495 5' -55.7 NC_001798.1 + 65603 0.67 0.858786
Target:  5'- gGGCCUccUCgCCGGCGAGgaCGCCc----- -3'
miRNA:   3'- gCCGGA--AG-GGCCGCUC--GUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 62282 0.66 0.90778
Target:  5'- cCGGgCggCCCGGCGGgagcGCGCCa----- -3'
miRNA:   3'- -GCCgGaaGGGCCGCU----CGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 61868 0.68 0.834542
Target:  5'- cCGGCCcagCCCGGCGGcccccucgggcGCGCCc----- -3'
miRNA:   3'- -GCCGGaa-GGGCCGCU-----------CGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 61192 0.73 0.538618
Target:  5'- uCGGCCUgcaCCGGCGcGCGCCg----- -3'
miRNA:   3'- -GCCGGAag-GGCCGCuCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 58109 0.66 0.888156
Target:  5'- gCGGCCgcccagggCCCGGCGucuGGguCCUUg--- -3'
miRNA:   3'- -GCCGGaa------GGGCCGC---UCguGGAAaaua -5'
5495 5' -55.7 NC_001798.1 + 53518 0.68 0.834542
Target:  5'- gCGGCCUggacauccccgacgaCCCGGCGGGCgacugcgaccccaGCCUg---- -3'
miRNA:   3'- -GCCGGAa--------------GGGCCGCUCG-------------UGGAaaaua -5'
5495 5' -55.7 NC_001798.1 + 43115 0.68 0.826074
Target:  5'- aCGGUCgcUUCCGGCGGGCGCg------ -3'
miRNA:   3'- -GCCGGa-AGGGCCGCUCGUGgaaaaua -5'
5495 5' -55.7 NC_001798.1 + 39063 0.66 0.888156
Target:  5'- gGGCCUcgaugagauuuUCCUGGCGcAGCACg------ -3'
miRNA:   3'- gCCGGA-----------AGGGCCGC-UCGUGgaaaaua -5'
5495 5' -55.7 NC_001798.1 + 32045 0.67 0.858786
Target:  5'- gGGCCgcucgcCCCGGCGuccgcgGGCGCCg----- -3'
miRNA:   3'- gCCGGaa----GGGCCGC------UCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 30440 0.73 0.508807
Target:  5'- cCGGCC--CCCGGcCGAGCGCCa----- -3'
miRNA:   3'- -GCCGGaaGGGCC-GCUCGUGGaaaaua -5'
5495 5' -55.7 NC_001798.1 + 29399 0.68 0.834542
Target:  5'- gGGCCgcgCCGGCGgGGCGCCg----- -3'
miRNA:   3'- gCCGGaagGGCCGC-UCGUGGaaaaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.