miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5496 3' -58.3 NC_001798.1 + 117758 0.66 0.839229
Target:  5'- cGGcGCGCCcuuCGCG-GCCACGgccaacccguGGGCg -3'
miRNA:   3'- aCCaUGCGGuc-GUGCuCGGUGC----------UCCG- -5'
5496 3' -58.3 NC_001798.1 + 110982 0.66 0.839229
Target:  5'- aGGgacgucACGCCcgucaGGCGCGcgguaugcguGGCCGCGgccAGGCg -3'
miRNA:   3'- aCCa-----UGCGG-----UCGUGC----------UCGGUGC---UCCG- -5'
5496 3' -58.3 NC_001798.1 + 3320 0.66 0.839229
Target:  5'- gGGgcgGCGgCGGCgGCGGGCUucccGCG-GGCg -3'
miRNA:   3'- aCCa--UGCgGUCG-UGCUCGG----UGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 25951 0.66 0.839229
Target:  5'- -aGUGCGCCGuGCGCuGGCCgGCGGcGCg -3'
miRNA:   3'- acCAUGCGGU-CGUGcUCGG-UGCUcCG- -5'
5496 3' -58.3 NC_001798.1 + 33181 0.66 0.839229
Target:  5'- aGGggGgGCgGGCACGAgaaGCCGCccccacccccGAGGCc -3'
miRNA:   3'- aCCa-UgCGgUCGUGCU---CGGUG----------CUCCG- -5'
5496 3' -58.3 NC_001798.1 + 41606 0.66 0.839229
Target:  5'- ---cACGCgAGCACGAGgC-CGuAGGCc -3'
miRNA:   3'- accaUGCGgUCGUGCUCgGuGC-UCCG- -5'
5496 3' -58.3 NC_001798.1 + 51791 0.66 0.839229
Target:  5'- cUGGUggACGCCAucGUGCGGGUgGCGAucaacgGGUg -3'
miRNA:   3'- -ACCA--UGCGGU--CGUGCUCGgUGCU------CCG- -5'
5496 3' -58.3 NC_001798.1 + 55979 0.66 0.839229
Target:  5'- ---cGCGCCGGgGa-GGCCGCGGGGg -3'
miRNA:   3'- accaUGCGGUCgUgcUCGGUGCUCCg -5'
5496 3' -58.3 NC_001798.1 + 149457 0.66 0.839229
Target:  5'- gGGUGCGgCGGCuccacGCGggGGCCGCGGcccGCa -3'
miRNA:   3'- aCCAUGCgGUCG-----UGC--UCGGUGCUc--CG- -5'
5496 3' -58.3 NC_001798.1 + 27986 0.66 0.839229
Target:  5'- cGGcGCuCCAGC-CGuGCCGCGccccGGCg -3'
miRNA:   3'- aCCaUGcGGUCGuGCuCGGUGCu---CCG- -5'
5496 3' -58.3 NC_001798.1 + 21959 0.66 0.839229
Target:  5'- cGGaGCGCgGGaugaCGCGGGCCcCG-GGCa -3'
miRNA:   3'- aCCaUGCGgUC----GUGCUCGGuGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 6057 0.66 0.839229
Target:  5'- ---gACGCCGGCgGCGAGC---GGGGCa -3'
miRNA:   3'- accaUGCGGUCG-UGCUCGgugCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 2845 0.66 0.839229
Target:  5'- cGGcGCGCaCGGC---GGCCACGGcGGCc -3'
miRNA:   3'- aCCaUGCG-GUCGugcUCGGUGCU-CCG- -5'
5496 3' -58.3 NC_001798.1 + 132084 0.66 0.834368
Target:  5'- cGGcGCGCCGuugucuguuucucccGCGCcugGGGCC-CGAGGUc -3'
miRNA:   3'- aCCaUGCGGU---------------CGUG---CUCGGuGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 3669 0.66 0.831091
Target:  5'- cGG-GCGCCAcGCGCGGGuUCugGAGcCa -3'
miRNA:   3'- aCCaUGCGGU-CGUGCUC-GGugCUCcG- -5'
5496 3' -58.3 NC_001798.1 + 111223 0.66 0.831091
Target:  5'- cGGUcccggcCGCCAGCGCGucgcggaacAGCC-CGuucauGGCa -3'
miRNA:   3'- aCCAu-----GCGGUCGUGC---------UCGGuGCu----CCG- -5'
5496 3' -58.3 NC_001798.1 + 26400 0.66 0.831091
Target:  5'- cGG-GCGCU-GCuCGAGCC-CGAcGGCg -3'
miRNA:   3'- aCCaUGCGGuCGuGCUCGGuGCU-CCG- -5'
5496 3' -58.3 NC_001798.1 + 108597 0.66 0.831091
Target:  5'- cGGccGCGCCGGacCGCGAGgggcuuacguucCCGCGGGGa -3'
miRNA:   3'- aCCa-UGCGGUC--GUGCUC------------GGUGCUCCg -5'
5496 3' -58.3 NC_001798.1 + 135204 0.66 0.831091
Target:  5'- cUGGc-CGCCcuCGCGGGCCuCGGGGa -3'
miRNA:   3'- -ACCauGCGGucGUGCUCGGuGCUCCg -5'
5496 3' -58.3 NC_001798.1 + 152049 0.66 0.831091
Target:  5'- cGGgggGCGgC-GCACGGcCCACGGGGg -3'
miRNA:   3'- aCCa--UGCgGuCGUGCUcGGUGCUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.