miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5496 5' -58.7 NC_001798.1 + 83422 0.66 0.823151
Target:  5'- -aGCGCCgcGGCCugCCCGCGAa--- -3'
miRNA:   3'- ucUGCGGacUUGGugGGGCGCUagga -5'
5496 5' -58.7 NC_001798.1 + 70648 0.66 0.823151
Target:  5'- cAGAgcUGCCUG-GCCAUgaaCCCGCGGaCCUc -3'
miRNA:   3'- -UCU--GCGGACuUGGUG---GGGCGCUaGGA- -5'
5496 5' -58.7 NC_001798.1 + 30810 0.66 0.823151
Target:  5'- uGGACGggcaacCCgcGGACgGCCCCGCGcUCCc -3'
miRNA:   3'- -UCUGC------GGa-CUUGgUGGGGCGCuAGGa -5'
5496 5' -58.7 NC_001798.1 + 110917 0.66 0.823151
Target:  5'- cAGcCGCCcccGCCGgCCCGCGGUCa- -3'
miRNA:   3'- -UCuGCGGacuUGGUgGGGCGCUAGga -5'
5496 5' -58.7 NC_001798.1 + 122091 0.66 0.814713
Target:  5'- uGGCggGCCUgGAGCCGCCCgGCGGg--- -3'
miRNA:   3'- uCUG--CGGA-CUUGGUGGGgCGCUagga -5'
5496 5' -58.7 NC_001798.1 + 123394 0.66 0.814713
Target:  5'- cGACGCCa-GGCC-CCCCGgGAgCCg -3'
miRNA:   3'- uCUGCGGacUUGGuGGGGCgCUaGGa -5'
5496 5' -58.7 NC_001798.1 + 2609 0.66 0.814713
Target:  5'- gGGGCGCggGGcGCCGCCCgGCGGcgcCCUg -3'
miRNA:   3'- -UCUGCGgaCU-UGGUGGGgCGCUa--GGA- -5'
5496 5' -58.7 NC_001798.1 + 5729 0.66 0.814713
Target:  5'- uGGCGCCcugcccgGGGCCcgcgucAUCCCGCGcUCCg -3'
miRNA:   3'- uCUGCGGa------CUUGG------UGGGGCGCuAGGa -5'
5496 5' -58.7 NC_001798.1 + 47380 0.66 0.814713
Target:  5'- --cCGCaggGAGCCACuCCCGCGGcCCc -3'
miRNA:   3'- ucuGCGga-CUUGGUG-GGGCGCUaGGa -5'
5496 5' -58.7 NC_001798.1 + 52786 0.66 0.814713
Target:  5'- cGGGCGCCcgUGAGCgggacggcagACCCCGCcuUCCUg -3'
miRNA:   3'- -UCUGCGG--ACUUGg---------UGGGGCGcuAGGA- -5'
5496 5' -58.7 NC_001798.1 + 58148 0.66 0.814713
Target:  5'- cGGCGCCgGAGCCcaaGCaCCUGCgucagcgaGAUCCa -3'
miRNA:   3'- uCUGCGGaCUUGG---UG-GGGCG--------CUAGGa -5'
5496 5' -58.7 NC_001798.1 + 135192 0.66 0.806115
Target:  5'- cAGGCccagcuCCUG-GCCGCCCuCGCGggCCUc -3'
miRNA:   3'- -UCUGc-----GGACuUGGUGGG-GCGCuaGGA- -5'
5496 5' -58.7 NC_001798.1 + 29030 0.66 0.806115
Target:  5'- cGGAcucCGCCccgGcGACCGCCCCGCGccggcuUCCc -3'
miRNA:   3'- -UCU---GCGGa--C-UUGGUGGGGCGCu-----AGGa -5'
5496 5' -58.7 NC_001798.1 + 106105 0.66 0.806115
Target:  5'- cGGCGCCgcGACCGCCggguCUGCGGuUCCg -3'
miRNA:   3'- uCUGCGGacUUGGUGG----GGCGCU-AGGa -5'
5496 5' -58.7 NC_001798.1 + 85388 0.66 0.806115
Target:  5'- --uCGCgCUGGACCGCCCCuGUcuGGUCUg -3'
miRNA:   3'- ucuGCG-GACUUGGUGGGG-CG--CUAGGa -5'
5496 5' -58.7 NC_001798.1 + 36234 0.66 0.806115
Target:  5'- -cGCGCCcGcguuucuGCCGCCCgCGCGcUCCUg -3'
miRNA:   3'- ucUGCGGaCu------UGGUGGG-GCGCuAGGA- -5'
5496 5' -58.7 NC_001798.1 + 27945 0.66 0.806115
Target:  5'- cGGCGCCg--GCCgcGCCCCgGCGcUCCa -3'
miRNA:   3'- uCUGCGGacuUGG--UGGGG-CGCuAGGa -5'
5496 5' -58.7 NC_001798.1 + 141312 0.66 0.797366
Target:  5'- cGAagaGCCUGAGaCCACCgCgGCcGUCCa -3'
miRNA:   3'- uCUg--CGGACUU-GGUGG-GgCGcUAGGa -5'
5496 5' -58.7 NC_001798.1 + 95072 0.66 0.797366
Target:  5'- cGGCGCCUGGACguCCauguuCGCGAgcugcaaCCUg -3'
miRNA:   3'- uCUGCGGACUUGguGGg----GCGCUa------GGA- -5'
5496 5' -58.7 NC_001798.1 + 26225 0.66 0.797366
Target:  5'- cGACGCCaUGG--CGCCCgGCGcgCCg -3'
miRNA:   3'- uCUGCGG-ACUugGUGGGgCGCuaGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.