miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5498 5' -56.2 NC_001798.1 + 32295 0.66 0.923897
Target:  5'- cCUCccUCGGCCCccGCGCugcugcgccgcgGGGGCCGAg -3'
miRNA:   3'- -GAGucAGCUGGGuuCGCG------------CCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 69152 0.66 0.923897
Target:  5'- gCUCGGUCuGCCgGccGgGCGGAGCCcGAu -3'
miRNA:   3'- -GAGUCAGcUGGgUu-CgCGCCUUGG-CU- -5'
5498 5' -56.2 NC_001798.1 + 27106 0.66 0.923897
Target:  5'- gUCAGgUGGCCCGAGCccccccGCaGGAGCgGGa -3'
miRNA:   3'- gAGUCaGCUGGGUUCG------CG-CCUUGgCU- -5'
5498 5' -56.2 NC_001798.1 + 134419 0.66 0.920614
Target:  5'- gUCGacGUCGACCCGcuggcccuguccgcGCGCGucGCCGAg -3'
miRNA:   3'- gAGU--CAGCUGGGUu-------------CGCGCcuUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 66795 0.66 0.918378
Target:  5'- --gAGUCGGCCgAcgcGCGCGGGuCCGu -3'
miRNA:   3'- gagUCAGCUGGgUu--CGCGCCUuGGCu -5'
5498 5' -56.2 NC_001798.1 + 15840 0.66 0.912624
Target:  5'- uUCGGggGGCCCGAaCGuCGGggUCGAc -3'
miRNA:   3'- gAGUCagCUGGGUUcGC-GCCuuGGCU- -5'
5498 5' -56.2 NC_001798.1 + 70223 0.66 0.912624
Target:  5'- cCUCgAG-CGAgCCGgcgggcAGCGCGGAcgaGCCGGc -3'
miRNA:   3'- -GAG-UCaGCUgGGU------UCGCGCCU---UGGCU- -5'
5498 5' -56.2 NC_001798.1 + 3879 0.66 0.912624
Target:  5'- -aCAGcacgCGcCCCGGGgGCGGGggGCCGGc -3'
miRNA:   3'- gaGUCa---GCuGGGUUCgCGCCU--UGGCU- -5'
5498 5' -56.2 NC_001798.1 + 34834 0.66 0.906638
Target:  5'- -cCGGg-GGCCCGGGC-CGGAccGCCGGg -3'
miRNA:   3'- gaGUCagCUGGGUUCGcGCCU--UGGCU- -5'
5498 5' -56.2 NC_001798.1 + 150040 0.66 0.906638
Target:  5'- --gAGUCcggGGCCC-GGCGCGGcGCCGc -3'
miRNA:   3'- gagUCAG---CUGGGuUCGCGCCuUGGCu -5'
5498 5' -56.2 NC_001798.1 + 108279 0.66 0.906638
Target:  5'- -cCAG-CGACCCccAGCGCGGAcgcuuggcGCCc- -3'
miRNA:   3'- gaGUCaGCUGGGu-UCGCGCCU--------UGGcu -5'
5498 5' -56.2 NC_001798.1 + 111413 0.66 0.906027
Target:  5'- gCUCAGggccagcgCGGcCCCGAGaaacgccCGCGGAGCCc- -3'
miRNA:   3'- -GAGUCa-------GCU-GGGUUC-------GCGCCUUGGcu -5'
5498 5' -56.2 NC_001798.1 + 78833 0.66 0.900422
Target:  5'- -aCGGcccCGGCCCcuGGCGCGGcacGCCGGc -3'
miRNA:   3'- gaGUCa--GCUGGGu-UCGCGCCu--UGGCU- -5'
5498 5' -56.2 NC_001798.1 + 132130 0.66 0.893977
Target:  5'- -gCAGgCGGCCCu-GCGCcgccgGGGGCCGGc -3'
miRNA:   3'- gaGUCaGCUGGGuuCGCG-----CCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 24567 0.66 0.893977
Target:  5'- -gCGG-CGGCCgGcGCGCGGAGgCGGg -3'
miRNA:   3'- gaGUCaGCUGGgUuCGCGCCUUgGCU- -5'
5498 5' -56.2 NC_001798.1 + 115539 0.66 0.893977
Target:  5'- -cCGGcCGGCCCcGGCGCGGAcauGCa-- -3'
miRNA:   3'- gaGUCaGCUGGGuUCGCGCCU---UGgcu -5'
5498 5' -56.2 NC_001798.1 + 103048 0.66 0.893977
Target:  5'- cCUCGcGUCGcACCCccucGCGCGucGCCGGg -3'
miRNA:   3'- -GAGU-CAGC-UGGGuu--CGCGCcuUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 77259 0.67 0.880418
Target:  5'- ---uGUCGGCCCuGGGCGCGGccGCCc- -3'
miRNA:   3'- gaguCAGCUGGG-UUCGCGCCu-UGGcu -5'
5498 5' -56.2 NC_001798.1 + 66885 0.67 0.873311
Target:  5'- gCUUGGgaaaGGCCaCGGGgGCGGGGCCGu -3'
miRNA:   3'- -GAGUCag--CUGG-GUUCgCGCCUUGGCu -5'
5498 5' -56.2 NC_001798.1 + 97576 0.67 0.858466
Target:  5'- -aCGGggagcgCGGCCCcgagccagGGGCGCaGGGGCCGGa -3'
miRNA:   3'- gaGUCa-----GCUGGG--------UUCGCG-CCUUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.