miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 3' -56 NC_001798.1 + 138530 0.66 0.919281
Target:  5'- -gGCACA-GCCGCugaacggGcgaaucgaagaccagGCGGUCGCCGg- -3'
miRNA:   3'- ggUGUGUuCGGCG-------U---------------UGCCAGCGGCaa -5'
5499 3' -56 NC_001798.1 + 41604 0.66 0.917575
Target:  5'- aCCACGCGAGCaCGaGGCcGUagGCCGUUa -3'
miRNA:   3'- -GGUGUGUUCG-GCgUUGcCAg-CGGCAA- -5'
5499 3' -56 NC_001798.1 + 98570 0.66 0.917575
Target:  5'- -gGCGCugguGGCCGCggUGG-CGUCGg- -3'
miRNA:   3'- ggUGUGu---UCGGCGuuGCCaGCGGCaa -5'
5499 3' -56 NC_001798.1 + 32034 0.66 0.914099
Target:  5'- aCCGCggccACGGGCCGCucgccccggcguccGCGGgCGCCGc- -3'
miRNA:   3'- -GGUG----UGUUCGGCGu-------------UGCCaGCGGCaa -5'
5499 3' -56 NC_001798.1 + 1613 0.66 0.914099
Target:  5'- aCCGCACGuuggccccgcggcagAGgCGCAGCGGcggcgCGUCGg- -3'
miRNA:   3'- -GGUGUGU---------------UCgGCGUUGCCa----GCGGCaa -5'
5499 3' -56 NC_001798.1 + 94570 0.66 0.911734
Target:  5'- gCCGC-CAAGgCGCG--GGUCGCCa-- -3'
miRNA:   3'- -GGUGuGUUCgGCGUugCCAGCGGcaa -5'
5499 3' -56 NC_001798.1 + 73964 0.66 0.911734
Target:  5'- aCGCGCGcGGCCGCGGgcucCGGgcCGCCGc- -3'
miRNA:   3'- gGUGUGU-UCGGCGUU----GCCa-GCGGCaa -5'
5499 3' -56 NC_001798.1 + 42753 0.66 0.911734
Target:  5'- cCCGCACAgacgGGCgGCGcGCGGg-GCCGa- -3'
miRNA:   3'- -GGUGUGU----UCGgCGU-UGCCagCGGCaa -5'
5499 3' -56 NC_001798.1 + 124947 0.66 0.911734
Target:  5'- -aACACGAGCCGCAggaACGuGUUGaCCu-- -3'
miRNA:   3'- ggUGUGUUCGGCGU---UGC-CAGC-GGcaa -5'
5499 3' -56 NC_001798.1 + 62530 0.66 0.911137
Target:  5'- aCGCGCAgcgGGUCGCGgaacaccGCGGcuaugUCGCCGg- -3'
miRNA:   3'- gGUGUGU---UCGGCGU-------UGCC-----AGCGGCaa -5'
5499 3' -56 NC_001798.1 + 111326 0.66 0.908116
Target:  5'- aCCG-ACGAGCCGCAcgagcGCGGggaagggggacaugCGCCGc- -3'
miRNA:   3'- -GGUgUGUUCGGCGU-----UGCCa-------------GCGGCaa -5'
5499 3' -56 NC_001798.1 + 146513 0.66 0.905657
Target:  5'- cCCGCGCcGGCCGCGGCGGagagaacccCUGUg -3'
miRNA:   3'- -GGUGUGuUCGGCGUUGCCagc------GGCAa -5'
5499 3' -56 NC_001798.1 + 153063 0.66 0.905657
Target:  5'- gCCGCccccugggGCGGGCggaGCGGCGGggcggCGCCGg- -3'
miRNA:   3'- -GGUG--------UGUUCGg--CGUUGCCa----GCGGCaa -5'
5499 3' -56 NC_001798.1 + 130272 0.66 0.905657
Target:  5'- aCCGCGCAuggAGCUGCGuACGcGUcgaagCGCCGa- -3'
miRNA:   3'- -GGUGUGU---UCGGCGU-UGC-CA-----GCGGCaa -5'
5499 3' -56 NC_001798.1 + 59155 0.66 0.905657
Target:  5'- cCCACGCAGGCgagGCGGgGG-CGcCCGUc -3'
miRNA:   3'- -GGUGUGUUCGg--CGUUgCCaGC-GGCAa -5'
5499 3' -56 NC_001798.1 + 130699 0.66 0.899345
Target:  5'- ---aACGAGaCCGCGGCGG-CGgCCGUg -3'
miRNA:   3'- ggugUGUUC-GGCGUUGCCaGC-GGCAa -5'
5499 3' -56 NC_001798.1 + 109625 0.66 0.899345
Target:  5'- gCCGCGCGcuaaccGCCcCGAUGGUCcGCCGa- -3'
miRNA:   3'- -GGUGUGUu-----CGGcGUUGCCAG-CGGCaa -5'
5499 3' -56 NC_001798.1 + 94119 0.66 0.899345
Target:  5'- gCGCAacuuUAAGuuCCGCGACGGUCugGCCGa- -3'
miRNA:   3'- gGUGU----GUUC--GGCGUUGCCAG--CGGCaa -5'
5499 3' -56 NC_001798.1 + 24832 0.66 0.899345
Target:  5'- cCUGCGCGuggccGGCgGCAGCgaGGcCGCCGUg -3'
miRNA:   3'- -GGUGUGU-----UCGgCGUUG--CCaGCGGCAa -5'
5499 3' -56 NC_001798.1 + 1433 0.66 0.899345
Target:  5'- gCGCGCAGGCgCGguGCGaGUgCGCCu-- -3'
miRNA:   3'- gGUGUGUUCG-GCguUGC-CA-GCGGcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.