miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 5' -60.8 NC_001798.1 + 124334 0.66 0.734126
Target:  5'- cGGGACGGCGcGgaaaGCgUCaUCCGCCCGa -3'
miRNA:   3'- -CUUUGCCGU-Cag--CGgAG-GGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 29933 0.66 0.734126
Target:  5'- gGggGCGGgacgcuugaCGGg-GCCgacCCCCGgCCCGCu -3'
miRNA:   3'- -CuuUGCC---------GUCagCGGa--GGGGC-GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 25434 0.66 0.734126
Target:  5'- --cGCGcGCuG-CGCCgCCCCGCCCc- -3'
miRNA:   3'- cuuUGC-CGuCaGCGGaGGGGCGGGcg -5'
5499 5' -60.8 NC_001798.1 + 122560 0.66 0.734126
Target:  5'- --cGCGGCcgaGGUgGCCUUCgUCGCgCGCa -3'
miRNA:   3'- cuuUGCCG---UCAgCGGAGG-GGCGgGCG- -5'
5499 5' -60.8 NC_001798.1 + 4158 0.66 0.734126
Target:  5'- ----gGGCAccccCGCCUCCUCGUcguCCGCg -3'
miRNA:   3'- cuuugCCGUca--GCGGAGGGGCG---GGCG- -5'
5499 5' -60.8 NC_001798.1 + 114625 0.66 0.724631
Target:  5'- ---uUGGagaAGgCGCCUCCCCugGCCCuGCu -3'
miRNA:   3'- cuuuGCCg--UCaGCGGAGGGG--CGGG-CG- -5'
5499 5' -60.8 NC_001798.1 + 29092 0.66 0.724631
Target:  5'- uAGGCGGUcccGGcCGCCaUCCCCGCgCa- -3'
miRNA:   3'- cUUUGCCG---UCaGCGG-AGGGGCGgGcg -5'
5499 5' -60.8 NC_001798.1 + 24666 0.66 0.724631
Target:  5'- -uGGCGGCcgugccggGGcUgGCCggagCCCgGCCCGCc -3'
miRNA:   3'- cuUUGCCG--------UC-AgCGGa---GGGgCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 34110 0.66 0.724631
Target:  5'- gGggGCGGUGGgCGUacgggCCCGaCCCGCg -3'
miRNA:   3'- -CuuUGCCGUCaGCGgag--GGGC-GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 144328 0.66 0.724631
Target:  5'- aGggGCGGC-GUCGCa---UCGCCCGa -3'
miRNA:   3'- -CuuUGCCGuCAGCGgaggGGCGGGCg -5'
5499 5' -60.8 NC_001798.1 + 150169 0.66 0.724631
Target:  5'- -cGGgGGCGGgcCGCCgCCCCcUCCGCg -3'
miRNA:   3'- cuUUgCCGUCa-GCGGaGGGGcGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 31922 0.66 0.723678
Target:  5'- --cGCGGCcucguccUCGCCUCUuccuccgCCGCcCCGCg -3'
miRNA:   3'- cuuUGCCGuc-----AGCGGAGG-------GGCG-GGCG- -5'
5499 5' -60.8 NC_001798.1 + 3049 0.66 0.715063
Target:  5'- --cACGGCcgccaGGUCGCCgucgaagccCUCCGCCaGCg -3'
miRNA:   3'- cuuUGCCG-----UCAGCGGa--------GGGGCGGgCG- -5'
5499 5' -60.8 NC_001798.1 + 23279 0.66 0.715063
Target:  5'- --cAUGGCcagccuGUCGCCgcgacCCCCGgcgcCCCGCc -3'
miRNA:   3'- cuuUGCCGu-----CAGCGGa----GGGGC----GGGCG- -5'
5499 5' -60.8 NC_001798.1 + 52058 0.66 0.715063
Target:  5'- uGggGCGcGaCuGUCGCgUggCCGCCCGCu -3'
miRNA:   3'- -CuuUGC-C-GuCAGCGgAggGGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 77250 0.66 0.715063
Target:  5'- cGGACGcGguGUCgGCC-CUgggcgcggCCGCCCGCg -3'
miRNA:   3'- cUUUGC-CguCAG-CGGaGG--------GGCGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 91774 0.66 0.715063
Target:  5'- aGAAgGGCGGccaCGCC-CCCUGCCgaugaCGCg -3'
miRNA:   3'- cUUUgCCGUCa--GCGGaGGGGCGG-----GCG- -5'
5499 5' -60.8 NC_001798.1 + 126472 0.66 0.715063
Target:  5'- cGAGACGGCcaugaccUCGCCcccgucgCCCCcCUCGCa -3'
miRNA:   3'- -CUUUGCCGuc-----AGCGGa------GGGGcGGGCG- -5'
5499 5' -60.8 NC_001798.1 + 135770 0.66 0.715063
Target:  5'- -cGGCGGcCGGcCGCCggCCCGCCgGa -3'
miRNA:   3'- cuUUGCC-GUCaGCGGagGGGCGGgCg -5'
5499 5' -60.8 NC_001798.1 + 110171 0.66 0.715063
Target:  5'- ----gGGC-GUUGaCgUCCgCCGCCCGCu -3'
miRNA:   3'- cuuugCCGuCAGC-GgAGG-GGCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.