miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5500 3' -61.6 NC_001798.1 + 79495 0.66 0.669643
Target:  5'- aGCUGCUGcgccgccGGGGCgaggcguaucugCGCGCCgGCgGa -3'
miRNA:   3'- aCGACGACaa-----CCCCG------------GCGUGGgUGgC- -5'
5500 3' -61.6 NC_001798.1 + 96711 0.66 0.669643
Target:  5'- gGCgGCgg-UGGGGUCGgGCCuCAUCGu -3'
miRNA:   3'- aCGaCGacaACCCCGGCgUGG-GUGGC- -5'
5500 3' -61.6 NC_001798.1 + 123925 0.66 0.667666
Target:  5'- gGCgUGCUGUgcccuggguccgGGGGCCuggugGCACCUccCCGg -3'
miRNA:   3'- aCG-ACGACAa-----------CCCCGG-----CGUGGGu-GGC- -5'
5500 3' -61.6 NC_001798.1 + 124011 0.66 0.659747
Target:  5'- cGCU-CUGUcccccGGGcaGCCGgGCCCGCCa -3'
miRNA:   3'- aCGAcGACAa----CCC--CGGCgUGGGUGGc -5'
5500 3' -61.6 NC_001798.1 + 20358 0.66 0.659747
Target:  5'- cGCUGCcgggcggGUUcGGGGCgGCACgCAggauCCGa -3'
miRNA:   3'- aCGACGa------CAA-CCCCGgCGUGgGU----GGC- -5'
5500 3' -61.6 NC_001798.1 + 53599 0.66 0.658756
Target:  5'- aGCUGCUggugcgcgccccGUUcaagagcGGGGCCGCcgcggccaaguACgCCGCCGc -3'
miRNA:   3'- aCGACGA------------CAA-------CCCCGGCG-----------UG-GGUGGC- -5'
5500 3' -61.6 NC_001798.1 + 109063 0.66 0.64983
Target:  5'- cGCgucuUUGUccugGGGGCCccgaCGCCCGCCGa -3'
miRNA:   3'- aCGac--GACAa---CCCCGGc---GUGGGUGGC- -5'
5500 3' -61.6 NC_001798.1 + 53571 0.66 0.64983
Target:  5'- gUGCUGCUGc---GGCC-CACCCugCu -3'
miRNA:   3'- -ACGACGACaaccCCGGcGUGGGugGc -5'
5500 3' -61.6 NC_001798.1 + 70433 0.66 0.6399
Target:  5'- gGCUGCUGgugcaccgcaUGGcGGUgGCGCUCcCCGa -3'
miRNA:   3'- aCGACGACa---------ACC-CCGgCGUGGGuGGC- -5'
5500 3' -61.6 NC_001798.1 + 64625 0.66 0.6399
Target:  5'- aGCaagaGCgUGUUGGGGCgcaGCGuCUCGCCGu -3'
miRNA:   3'- aCGa---CG-ACAACCCCGg--CGU-GGGUGGC- -5'
5500 3' -61.6 NC_001798.1 + 102649 0.66 0.629964
Target:  5'- gGCgGC-GgaGGGGCCgggGCGCCCgauGCCGa -3'
miRNA:   3'- aCGaCGaCaaCCCCGG---CGUGGG---UGGC- -5'
5500 3' -61.6 NC_001798.1 + 135373 0.66 0.629964
Target:  5'- aGCUGCUcGgcGGGGUCaUGgCCGCCGu -3'
miRNA:   3'- aCGACGA-CaaCCCCGGcGUgGGUGGC- -5'
5500 3' -61.6 NC_001798.1 + 24128 0.66 0.629964
Target:  5'- gGCaGCgUGgcGcGGGCCGUGcCCCACCu -3'
miRNA:   3'- aCGaCG-ACaaC-CCCGGCGU-GGGUGGc -5'
5500 3' -61.6 NC_001798.1 + 25820 0.66 0.629964
Target:  5'- gGCUGCUGgccGGcGCCuGCGaCCGCCGc -3'
miRNA:   3'- aCGACGACaacCC-CGG-CGUgGGUGGC- -5'
5500 3' -61.6 NC_001798.1 + 121927 0.66 0.620029
Target:  5'- cGC-GCUGguccaGcGGGCCGUgcaggacgucACCCGCCGc -3'
miRNA:   3'- aCGaCGACaa---C-CCCGGCG----------UGGGUGGC- -5'
5500 3' -61.6 NC_001798.1 + 129356 0.66 0.620029
Target:  5'- cGCcggGcCUGgcGGGGCCcccGgACCCGCCa -3'
miRNA:   3'- aCGa--C-GACaaCCCCGG---CgUGGGUGGc -5'
5500 3' -61.6 NC_001798.1 + 96983 0.66 0.620029
Target:  5'- cGCgGCgggcGgcGGGGCCaggGCcgGCCCGCCGc -3'
miRNA:   3'- aCGaCGa---CaaCCCCGG---CG--UGGGUGGC- -5'
5500 3' -61.6 NC_001798.1 + 134949 0.66 0.620029
Target:  5'- cUGgUGCg---GGGcGCCGCGgCCACCc -3'
miRNA:   3'- -ACgACGacaaCCC-CGGCGUgGGUGGc -5'
5500 3' -61.6 NC_001798.1 + 133747 0.66 0.616058
Target:  5'- aGCUGCgcgcgcccgcgUGGGGgCGCugCUugCGc -3'
miRNA:   3'- aCGACGaca--------ACCCCgGCGugGGugGC- -5'
5500 3' -61.6 NC_001798.1 + 122359 0.67 0.610104
Target:  5'- gGUgGCg--UGGGGCgggcgaCGCGCCCGCCc -3'
miRNA:   3'- aCGaCGacaACCCCG------GCGUGGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.