miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5500 5' -50.6 NC_001798.1 + 105270 0.66 0.997228
Target:  5'- aUCCGccuCuuCGGcCGCGGCCGcCGCGg -3'
miRNA:   3'- -AGGCuauGuuGUUuGCGCUGGC-GUGC- -5'
5500 5' -50.6 NC_001798.1 + 138163 0.66 0.997228
Target:  5'- cCCGGguccuGgGGGCGCGACC-CGCGg -3'
miRNA:   3'- aGGCUaugu-UgUUUGCGCUGGcGUGC- -5'
5500 5' -50.6 NC_001798.1 + 24749 0.66 0.997228
Target:  5'- gCCGAcGCGccccGCcuGCGCGccugGCUGCGCGa -3'
miRNA:   3'- aGGCUaUGU----UGuuUGCGC----UGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 117208 0.66 0.997181
Target:  5'- aCCGucGUGCGGCAGGaccgcuuCGUGACCGagaACGu -3'
miRNA:   3'- aGGC--UAUGUUGUUU-------GCGCUGGCg--UGC- -5'
5500 5' -50.6 NC_001798.1 + 78205 0.66 0.996728
Target:  5'- gCCGAcUACGugGAGCuccGCGAUCGcCugGa -3'
miRNA:   3'- aGGCU-AUGUugUUUG---CGCUGGC-GugC- -5'
5500 5' -50.6 NC_001798.1 + 53304 0.66 0.996728
Target:  5'- gCCGAUcGCAGCGucCGgcUGGCgGCGCGg -3'
miRNA:   3'- aGGCUA-UGUUGUuuGC--GCUGgCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 55734 0.66 0.996728
Target:  5'- gCCaGGUGCuug----GCGGCCGCACGg -3'
miRNA:   3'- aGG-CUAUGuuguuugCGCUGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 79374 0.66 0.996728
Target:  5'- gCCGGcgGCcaGACGGGCGCGGgcgcggaguCCGCGCc -3'
miRNA:   3'- aGGCUa-UG--UUGUUUGCGCU---------GGCGUGc -5'
5500 5' -50.6 NC_001798.1 + 82998 0.66 0.996728
Target:  5'- gCCGcAUACAACAAcagcuGCaGCGGacCCGCAgGg -3'
miRNA:   3'- aGGC-UAUGUUGUU-----UG-CGCU--GGCGUgC- -5'
5500 5' -50.6 NC_001798.1 + 121713 0.66 0.996728
Target:  5'- gCCGccGCGACGGAgGCGGCgGCcCa -3'
miRNA:   3'- aGGCuaUGUUGUUUgCGCUGgCGuGc -5'
5500 5' -50.6 NC_001798.1 + 131289 0.66 0.996728
Target:  5'- gCCGAgACGAUGAACGuCGccACCuGCACa -3'
miRNA:   3'- aGGCUaUGUUGUUUGC-GC--UGG-CGUGc -5'
5500 5' -50.6 NC_001798.1 + 58415 0.66 0.996728
Target:  5'- -gCGcagGCGGCcAGCGCGAgCGCGCc -3'
miRNA:   3'- agGCua-UGUUGuUUGCGCUgGCGUGc -5'
5500 5' -50.6 NC_001798.1 + 97247 0.66 0.996728
Target:  5'- gUUCGG-GCGGCGGGCGgagcacuuCGAUCGCGCGu -3'
miRNA:   3'- -AGGCUaUGUUGUUUGC--------GCUGGCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 135332 0.66 0.996728
Target:  5'- cCUGGUGC--CGGACGCGugCGaCGCc -3'
miRNA:   3'- aGGCUAUGuuGUUUGCGCugGC-GUGc -5'
5500 5' -50.6 NC_001798.1 + 35048 0.66 0.996674
Target:  5'- cCCGAgGCAAgAGGCG-GACCcucggagGCGCGg -3'
miRNA:   3'- aGGCUaUGUUgUUUGCgCUGG-------CGUGC- -5'
5500 5' -50.6 NC_001798.1 + 86095 0.66 0.996674
Target:  5'- cCCGGcUGCGcgccgccGCGGACGCccGCCGCGCc -3'
miRNA:   3'- aGGCU-AUGU-------UGUUUGCGc-UGGCGUGc -5'
5500 5' -50.6 NC_001798.1 + 92540 0.66 0.996156
Target:  5'- cCUGAcgcggcucUGCgAGCGGGCGCGcCCGCAUu -3'
miRNA:   3'- aGGCU--------AUG-UUGUUUGCGCuGGCGUGc -5'
5500 5' -50.6 NC_001798.1 + 76746 0.66 0.996156
Target:  5'- -gCGAUGCucAACGAcGCGCGGgaGCGCGc -3'
miRNA:   3'- agGCUAUG--UUGUU-UGCGCUggCGUGC- -5'
5500 5' -50.6 NC_001798.1 + 67620 0.66 0.996156
Target:  5'- cUCCGGcgAgGGCGGAUGCGGCaGgGCGg -3'
miRNA:   3'- -AGGCUa-UgUUGUUUGCGCUGgCgUGC- -5'
5500 5' -50.6 NC_001798.1 + 46723 0.66 0.996156
Target:  5'- cCCGcgGCAuugccauucGCAggcccagagaGACGCGGCC-CACGg -3'
miRNA:   3'- aGGCuaUGU---------UGU----------UUGCGCUGGcGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.