miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5501 5' -48.7 NC_001798.1 + 138541 0.66 0.999521
Target:  5'- uGAAcGGGCGAAucgAAgaCCaGGCGGUCgCCg -3'
miRNA:   3'- -CUU-CCUGCUUua-UUa-GG-CCGCUAG-GG- -5'
5501 5' -48.7 NC_001798.1 + 3892 0.66 0.999521
Target:  5'- cGGGGGCGggGgg--CCGGC---CCCg -3'
miRNA:   3'- cUUCCUGCuuUauuaGGCCGcuaGGG- -5'
5501 5' -48.7 NC_001798.1 + 116605 0.66 0.999521
Target:  5'- --cGGugaGGAGUGc-CCGaGCGAUCCCg -3'
miRNA:   3'- cuuCCug-CUUUAUuaGGC-CGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 75870 0.66 0.999521
Target:  5'- -cGGGGCGAAGagaugcgGGUCgaGGCGGaggCCCg -3'
miRNA:   3'- cuUCCUGCUUUa------UUAGg-CCGCUa--GGG- -5'
5501 5' -48.7 NC_001798.1 + 90076 0.66 0.999521
Target:  5'- -cAGGACGAcggGggCCGGCaGGcCCCu -3'
miRNA:   3'- cuUCCUGCUuuaUuaGGCCG-CUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 104894 0.66 0.999521
Target:  5'- cGAAGG-CGGAAUAGU--GGCGcuggCCCa -3'
miRNA:   3'- -CUUCCuGCUUUAUUAggCCGCua--GGG- -5'
5501 5' -48.7 NC_001798.1 + 125256 0.66 0.999521
Target:  5'- uGGGGcACGgcGUccUCCGGCGcgcacUCCCg -3'
miRNA:   3'- cUUCC-UGCuuUAuuAGGCCGCu----AGGG- -5'
5501 5' -48.7 NC_001798.1 + 12712 0.66 0.999404
Target:  5'- gGggGcGGCGGGggcGUGGUgCGGCGcgacGUCCUg -3'
miRNA:   3'- -CuuC-CUGCUU---UAUUAgGCCGC----UAGGG- -5'
5501 5' -48.7 NC_001798.1 + 102647 0.66 0.999404
Target:  5'- cGGGcGGCGGAGggg-CCGGgGcgCCCg -3'
miRNA:   3'- cUUC-CUGCUUUauuaGGCCgCuaGGG- -5'
5501 5' -48.7 NC_001798.1 + 44719 0.66 0.999404
Target:  5'- aGGAGGGCGAGcgAGga-GGUGAUaacgcaCCCg -3'
miRNA:   3'- -CUUCCUGCUUuaUUaggCCGCUA------GGG- -5'
5501 5' -48.7 NC_001798.1 + 28193 0.66 0.999263
Target:  5'- cGAGGGCGggGggaagGcgCCGGaGGcCCCg -3'
miRNA:   3'- cUUCCUGCuuUa----UuaGGCCgCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 30173 0.66 0.999263
Target:  5'- gGAGGGAcaCGggGgacacggCgCGGgGGUCCCg -3'
miRNA:   3'- -CUUCCU--GCuuUauua---G-GCCgCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 40004 0.66 0.999263
Target:  5'- --cGGAcuCGggGUcGUCgCGGCGG-CCCu -3'
miRNA:   3'- cuuCCU--GCuuUAuUAG-GCCGCUaGGG- -5'
5501 5' -48.7 NC_001798.1 + 47075 0.66 0.999263
Target:  5'- -cGGGGCGAcagcg-CCGGUGugguguccGUCCCg -3'
miRNA:   3'- cuUCCUGCUuuauuaGGCCGC--------UAGGG- -5'
5501 5' -48.7 NC_001798.1 + 102023 0.66 0.999263
Target:  5'- cGGGGuaGCGggGUGGUUgGGCGGgggUCuCCg -3'
miRNA:   3'- cUUCC--UGCuuUAUUAGgCCGCU---AG-GG- -5'
5501 5' -48.7 NC_001798.1 + 149306 0.66 0.999094
Target:  5'- cGGAGGcCGugGaAGUCCaGCGcgCCCa -3'
miRNA:   3'- -CUUCCuGCuuUaUUAGGcCGCuaGGG- -5'
5501 5' -48.7 NC_001798.1 + 35389 0.66 0.999094
Target:  5'- gGAAGGGCGug--GggCCGGCcgccgGAUgCCCg -3'
miRNA:   3'- -CUUCCUGCuuuaUuaGGCCG-----CUA-GGG- -5'
5501 5' -48.7 NC_001798.1 + 25544 0.66 0.999094
Target:  5'- cGGAGGACG---UGcgCgUGGUGAUCCUc -3'
miRNA:   3'- -CUUCCUGCuuuAUuaG-GCCGCUAGGG- -5'
5501 5' -48.7 NC_001798.1 + 15288 0.66 0.999094
Target:  5'- --cGGGCGuggcGGUGGUCgCGGCGA-CCg -3'
miRNA:   3'- cuuCCUGCu---UUAUUAG-GCCGCUaGGg -5'
5501 5' -48.7 NC_001798.1 + 152049 0.66 0.998957
Target:  5'- cGggGGGCGGcgcacggcccaCGGgGGUCCCc -3'
miRNA:   3'- -CuuCCUGCUuuauuag----GCCgCUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.