miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 3' -57.6 NC_001798.1 + 138213 0.67 0.809587
Target:  5'- aGGGaggGUG-UGGUCGACGGCG--GGGGu -3'
miRNA:   3'- -CCCg--CACuGCCAGCUGUCGUagCCCU- -5'
5504 3' -57.6 NC_001798.1 + 6247 0.68 0.800946
Target:  5'- cGGGCGgggGACGGgggGACGGgc-CGGGGg -3'
miRNA:   3'- -CCCGCa--CUGCCag-CUGUCguaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 150194 0.68 0.789497
Target:  5'- cGGCGUGGgGGgCGGCAccggggguguugguGCcgCGGGGg -3'
miRNA:   3'- cCCGCACUgCCaGCUGU--------------CGuaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 66766 0.68 0.783237
Target:  5'- gGGGUGcGGCGG-CGugGGCcgCGGa- -3'
miRNA:   3'- -CCCGCaCUGCCaGCugUCGuaGCCcu -5'
5504 3' -57.6 NC_001798.1 + 45175 0.68 0.783237
Target:  5'- aGGGCuccaccaucGACGGggccguugCGGC-GCAUCGGGAc -3'
miRNA:   3'- -CCCGca-------CUGCCa-------GCUGuCGUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 136135 0.68 0.774185
Target:  5'- aGGCGUGugGGgCGAgGGC---GGGAg -3'
miRNA:   3'- cCCGCACugCCaGCUgUCGuagCCCU- -5'
5504 3' -57.6 NC_001798.1 + 100755 0.68 0.765012
Target:  5'- gGGGCGc-GCGGUCGGCAagGUAgucaUGGGAg -3'
miRNA:   3'- -CCCGCacUGCCAGCUGU--CGUa---GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 154291 0.68 0.759454
Target:  5'- cGGGcCGUGuuGCGGgcccucuuaaggggCGGCGGCAggaCGGGGa -3'
miRNA:   3'- -CCC-GCAC--UGCCa-------------GCUGUCGUa--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 36149 0.68 0.755728
Target:  5'- gGGGCGcGGCGG-CGGuCGGgGUgGGGGg -3'
miRNA:   3'- -CCCGCaCUGCCaGCU-GUCgUAgCCCU- -5'
5504 3' -57.6 NC_001798.1 + 131347 0.69 0.746339
Target:  5'- cGGGCGcGAC-GUCGGCgcccggcgcGGCcUCGGGGg -3'
miRNA:   3'- -CCCGCaCUGcCAGCUG---------UCGuAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 101847 0.69 0.746339
Target:  5'- aGGCGUGGguccCGG-CGGCGGCGgaGGGGg -3'
miRNA:   3'- cCCGCACU----GCCaGCUGUCGUagCCCU- -5'
5504 3' -57.6 NC_001798.1 + 4847 0.69 0.736855
Target:  5'- cGGCGgggcGACGGUC--CGGguUCGGGGu -3'
miRNA:   3'- cCCGCa---CUGCCAGcuGUCguAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 101878 0.69 0.736855
Target:  5'- uGGGCGUGuGCGGggGAgGGCugauguagCGGGGg -3'
miRNA:   3'- -CCCGCAC-UGCCagCUgUCGua------GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 30948 0.69 0.736855
Target:  5'- cGGGCGgggGGCGGgCGGgGGUcgggCGGGGg -3'
miRNA:   3'- -CCCGCa--CUGCCaGCUgUCGua--GCCCU- -5'
5504 3' -57.6 NC_001798.1 + 109684 0.69 0.735902
Target:  5'- cGGGCGccguuccUGGCGGgcgcgcccUCGGCcgAGCAgCGGGAa -3'
miRNA:   3'- -CCCGC-------ACUGCC--------AGCUG--UCGUaGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 71582 0.69 0.717637
Target:  5'- cGGGCGgcucugugaGGCGGUCGGCcu-GUCGGGc -3'
miRNA:   3'- -CCCGCa--------CUGCCAGCUGucgUAGCCCu -5'
5504 3' -57.6 NC_001798.1 + 1636 0.69 0.717637
Target:  5'- aGGCGcaGCGG-CGGC-GCGUCGGGGu -3'
miRNA:   3'- cCCGCacUGCCaGCUGuCGUAGCCCU- -5'
5504 3' -57.6 NC_001798.1 + 104448 0.69 0.717637
Target:  5'- uGGUGuUGGCGGUCGcccgcaGCAGCGUCuGGu -3'
miRNA:   3'- cCCGC-ACUGCCAGC------UGUCGUAGcCCu -5'
5504 3' -57.6 NC_001798.1 + 57409 0.69 0.717637
Target:  5'- cGGGuCGUGGCGGUUG-CAucGCA-CGGGc -3'
miRNA:   3'- -CCC-GCACUGCCAGCuGU--CGUaGCCCu -5'
5504 3' -57.6 NC_001798.1 + 105709 0.69 0.706944
Target:  5'- gGGGCGacaGCGGUCGACacccaggGGCuguuGUCGGGu -3'
miRNA:   3'- -CCCGCac-UGCCAGCUG-------UCG----UAGCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.