miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 137201 0.66 0.913691
Target:  5'- gAUCgCUGAc--CUGGCGCACC-UCGCa -3'
miRNA:   3'- -UAGgGGCUuuuGGUCGCGUGGcAGCG- -5'
5504 5' -56.2 NC_001798.1 + 127506 0.66 0.913691
Target:  5'- cGUgCCgGAGGgcauCCGGCGcCACCuUCGCa -3'
miRNA:   3'- -UAgGGgCUUUu---GGUCGC-GUGGcAGCG- -5'
5504 5' -56.2 NC_001798.1 + 59543 0.66 0.913691
Target:  5'- -aCCCCGGAAggcggagaggggGCUGGgGCuCgCGUCGCc -3'
miRNA:   3'- uaGGGGCUUU------------UGGUCgCGuG-GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 35044 0.66 0.913691
Target:  5'- gGUCCCCG-AGGCaagaGGCGgACCcUCGg -3'
miRNA:   3'- -UAGGGGCuUUUGg---UCGCgUGGcAGCg -5'
5504 5' -56.2 NC_001798.1 + 18260 0.66 0.913691
Target:  5'- --gCCCGggGGCCAGguaCGCAUCcucCGCg -3'
miRNA:   3'- uagGGGCuuUUGGUC---GCGUGGca-GCG- -5'
5504 5' -56.2 NC_001798.1 + 118813 0.66 0.913691
Target:  5'- -gCCCCGugGACCuggGGCucacgcacgccgGCACCGUCa- -3'
miRNA:   3'- uaGGGGCuuUUGG---UCG------------CGUGGCAGcg -5'
5504 5' -56.2 NC_001798.1 + 44861 0.66 0.913691
Target:  5'- -----gGAAAGCCGGCGCagaGCCG-CGCg -3'
miRNA:   3'- uaggggCUUUUGGUCGCG---UGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 60142 0.66 0.913691
Target:  5'- uUCCCCGuAGACCgucuuGGCGUugGCgGcCGCu -3'
miRNA:   3'- uAGGGGCuUUUGG-----UCGCG--UGgCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 25454 0.66 0.913691
Target:  5'- -cCCCCGG----CGGCGCGCCcGcCGCc -3'
miRNA:   3'- uaGGGGCUuuugGUCGCGUGG-CaGCG- -5'
5504 5' -56.2 NC_001798.1 + 153895 0.66 0.913102
Target:  5'- cGUCgUCGuu-GCCGGCGUAguccgcgUCGUCGCu -3'
miRNA:   3'- -UAGgGGCuuuUGGUCGCGU-------GGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 125282 0.66 0.9077
Target:  5'- -cUCCCGAAAccGCaGGCGCGCCacCGCc -3'
miRNA:   3'- uaGGGGCUUU--UGgUCGCGUGGcaGCG- -5'
5504 5' -56.2 NC_001798.1 + 23574 0.66 0.9077
Target:  5'- -gCCCCGggGG-CGGCGCcCCGgccgaGCc -3'
miRNA:   3'- uaGGGGCuuUUgGUCGCGuGGCag---CG- -5'
5504 5' -56.2 NC_001798.1 + 57386 0.66 0.9077
Target:  5'- -aCCCgCGAGccguaccgGGCCAGCGggUCGUgGCg -3'
miRNA:   3'- uaGGG-GCUU--------UUGGUCGCguGGCAgCG- -5'
5504 5' -56.2 NC_001798.1 + 79110 0.66 0.9077
Target:  5'- -gUCCUGGGcGCCaAGgGCGCCGagCGCg -3'
miRNA:   3'- uaGGGGCUUuUGG-UCgCGUGGCa-GCG- -5'
5504 5' -56.2 NC_001798.1 + 102995 0.66 0.9077
Target:  5'- cUCCacgCCGggGGCCcaGGUGCGCCcGgccagCGCg -3'
miRNA:   3'- uAGG---GGCuuUUGG--UCGCGUGG-Ca----GCG- -5'
5504 5' -56.2 NC_001798.1 + 122417 0.66 0.9077
Target:  5'- -gCCCUGAcggAGGCCuGUGCcGCCGagCGCg -3'
miRNA:   3'- uaGGGGCU---UUUGGuCGCG-UGGCa-GCG- -5'
5504 5' -56.2 NC_001798.1 + 131543 0.66 0.9077
Target:  5'- cUUCCCGGAcGCgAGCGCcCCGaCGg -3'
miRNA:   3'- uAGGGGCUUuUGgUCGCGuGGCaGCg -5'
5504 5' -56.2 NC_001798.1 + 91968 0.66 0.9077
Target:  5'- -cCCCCGu---CCGGCGCGauCCgGUgGCg -3'
miRNA:   3'- uaGGGGCuuuuGGUCGCGU--GG-CAgCG- -5'
5504 5' -56.2 NC_001798.1 + 131382 0.66 0.9077
Target:  5'- gAUCCCCuGggGGcCCGGCGUcCCaUCGg -3'
miRNA:   3'- -UAGGGG-CuuUU-GGUCGCGuGGcAGCg -5'
5504 5' -56.2 NC_001798.1 + 147708 0.66 0.9077
Target:  5'- gGUCCCaGAAAGggcaggcaggUCAGcCGCACCGccCGCg -3'
miRNA:   3'- -UAGGGgCUUUU----------GGUC-GCGUGGCa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.