miRNA display CGI


Results 1 - 20 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 5' -65.5 NC_001798.1 + 117991 0.65 0.549955
Target:  5'- -aGCGCCCGcCGGggUGCcgcgaGCUCGuggaagacccgugcGGCCu -3'
miRNA:   3'- gcCGCGGGC-GCCuuGCG-----UGGGC--------------CCGG- -5'
5506 5' -65.5 NC_001798.1 + 65146 0.66 0.547176
Target:  5'- aCGGCGUC-GCGGAgccgcccaaagucaaACGUcuGCCuggagacgcauCGGGCCa -3'
miRNA:   3'- -GCCGCGGgCGCCU---------------UGCG--UGG-----------GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 115893 0.66 0.547176
Target:  5'- cCGcCGUCCGCGGGGCGUucgaggaccgcagcuACCCGG-Cg -3'
miRNA:   3'- -GCcGCGGGCGCCUUGCG---------------UGGGCCcGg -5'
5506 5' -65.5 NC_001798.1 + 75689 0.66 0.547176
Target:  5'- aCGGgGaCCuCGCGGAccuggaucugcagcuGCGCGccgcCCCGccGGCCa -3'
miRNA:   3'- -GCCgC-GG-GCGCCU---------------UGCGU----GGGC--CCGG- -5'
5506 5' -65.5 NC_001798.1 + 42747 0.66 0.543478
Target:  5'- cCGuCGCCCGCacagacGGGCgGCGCgCgGGGCCg -3'
miRNA:   3'- -GCcGCGGGCGc-----CUUG-CGUG-GgCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 115409 0.66 0.543478
Target:  5'- gCGGCuGUCCaUGGAgaACGCGgUCGGGaCCg -3'
miRNA:   3'- -GCCG-CGGGcGCCU--UGCGUgGGCCC-GG- -5'
5506 5' -65.5 NC_001798.1 + 81083 0.66 0.543478
Target:  5'- uGGCuaCCGCGGGggACGUuCUCGcGGCg -3'
miRNA:   3'- gCCGcgGGCGCCU--UGCGuGGGC-CCGg -5'
5506 5' -65.5 NC_001798.1 + 25691 0.66 0.543478
Target:  5'- gCGG-GCCCGCcacGGC-CGCCUGGGCg -3'
miRNA:   3'- -GCCgCGGGCGcc-UUGcGUGGGCCCGg -5'
5506 5' -65.5 NC_001798.1 + 97817 0.66 0.542554
Target:  5'- gCGGCGCgCGCGcGcuucUGCGCCCugacggcGGGCg -3'
miRNA:   3'- -GCCGCGgGCGC-Cuu--GCGUGGG-------CCCGg -5'
5506 5' -65.5 NC_001798.1 + 151582 0.66 0.542554
Target:  5'- uCGGCGggCGUGGGGCugcccugGCGCucggccgggggCCGGGCCg -3'
miRNA:   3'- -GCCGCggGCGCCUUG-------CGUG-----------GGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 25032 0.66 0.537945
Target:  5'- -cGCGCCCGCcuccgcgccgcgGGAggcGCGCaagcgcaagagccccGCCCcGGCCa -3'
miRNA:   3'- gcCGCGGGCG------------CCU---UGCG---------------UGGGcCCGG- -5'
5506 5' -65.5 NC_001798.1 + 108450 0.66 0.537945
Target:  5'- uCGGCcgGCCU-CGGAACGCgagccuGCCCgagcuccccgaggcgGGGCCc -3'
miRNA:   3'- -GCCG--CGGGcGCCUUGCG------UGGG---------------CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 3625 0.66 0.537945
Target:  5'- -cGCGCCCGagaucCGGAagcaggccugguccaGCGCcacgucCCCGGGCg -3'
miRNA:   3'- gcCGCGGGC-----GCCU---------------UGCGu-----GGGCCCGg -5'
5506 5' -65.5 NC_001798.1 + 83353 0.66 0.534268
Target:  5'- gCGGCgucGCCCGC-GAACauagGCugCgGGGCg -3'
miRNA:   3'- -GCCG---CGGGCGcCUUG----CGugGgCCCGg -5'
5506 5' -65.5 NC_001798.1 + 152941 0.66 0.534268
Target:  5'- --aUGCgCGgGGAugGCGgCCGGGaCCg -3'
miRNA:   3'- gccGCGgGCgCCUugCGUgGGCCC-GG- -5'
5506 5' -65.5 NC_001798.1 + 74873 0.66 0.534268
Target:  5'- gGGCaguGCCgGUGGGuCGC-CaCCGGGCg -3'
miRNA:   3'- gCCG---CGGgCGCCUuGCGuG-GGCCCGg -5'
5506 5' -65.5 NC_001798.1 + 56850 0.66 0.534268
Target:  5'- -uGCGUCUGCGug-UGUAUCUGGGCCg -3'
miRNA:   3'- gcCGCGGGCGCcuuGCGUGGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 145470 0.66 0.534268
Target:  5'- cCGcGCGCCCccgccCGGccgccGCGCGCCCccgcccGGCCg -3'
miRNA:   3'- -GC-CGCGGGc----GCCu----UGCGUGGGc-----CCGG- -5'
5506 5' -65.5 NC_001798.1 + 145428 0.66 0.534268
Target:  5'- cCGcGCGCCCccgccCGGccgccGCGCGCCCccgcccGGCCg -3'
miRNA:   3'- -GC-CGCGGGc----GCCu----UGCGUGGGc-----CCGG- -5'
5506 5' -65.5 NC_001798.1 + 120343 0.66 0.534268
Target:  5'- --aCGCCC-CGGggUgcagcgccaGCACCUGGGCg -3'
miRNA:   3'- gccGCGGGcGCCuuG---------CGUGGGCCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.