Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5509 | 5' | -58.5 | NC_001798.1 | + | 18607 | 0.66 | 0.813876 |
Target: 5'- -cGGG--UCC-GCGCGCCgUCCCgCCGu -3' miRNA: 3'- gaCCUuaAGGuCGUGCGG-AGGGgGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 37615 | 0.66 | 0.813876 |
Target: 5'- uUGGccUUCCuuuGGCGguaaGCUUCCCCCCu -3' miRNA: 3'- gACCuuAAGG---UCGUg---CGGAGGGGGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 122365 | 0.66 | 0.813876 |
Target: 5'- gUGGGg--CgGGCgacGCGCCcgCCCCCCGc -3' miRNA: 3'- gACCUuaaGgUCG---UGCGGa-GGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 27937 | 0.66 | 0.80519 |
Target: 5'- -cGGggUcCCGGCGCcgGCCgCgCCCCGg -3' miRNA: 3'- gaCCuuAaGGUCGUG--CGGaGgGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 29992 | 0.66 | 0.80519 |
Target: 5'- gUGGg---CC-GUGCGCCgCCCCCCGa -3' miRNA: 3'- gACCuuaaGGuCGUGCGGaGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 107576 | 0.66 | 0.80519 |
Target: 5'- uUGGAcgUCuUGGCcgacCGCCUCCUUCCGa -3' miRNA: 3'- gACCUuaAG-GUCGu---GCGGAGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 19216 | 0.66 | 0.80519 |
Target: 5'- gUGGAccccGUUCCccGCAgCGCCUaaucaCCCCCu -3' miRNA: 3'- gACCU----UAAGGu-CGU-GCGGAg----GGGGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 69848 | 0.66 | 0.79635 |
Target: 5'- -cGGGccgccgUCGGC-CGCCcCCCCCCAc -3' miRNA: 3'- gaCCUuaa---GGUCGuGCGGaGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 24688 | 0.66 | 0.79635 |
Target: 5'- -cGGAGc-CCGGCcCGCCgcgCCCCCg- -3' miRNA: 3'- gaCCUUaaGGUCGuGCGGa--GGGGGgu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 23344 | 0.66 | 0.79635 |
Target: 5'- -------gCCGGCGCGCC-CCCCgCCGg -3' miRNA: 3'- gaccuuaaGGUCGUGCGGaGGGG-GGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 9889 | 0.66 | 0.787366 |
Target: 5'- gUGGAgg-CCAGcCACGCCaaCCCCgGg -3' miRNA: 3'- gACCUuaaGGUC-GUGCGGagGGGGgU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 31550 | 0.66 | 0.775484 |
Target: 5'- -gGGAggUCUgccacagucgucggGGCGCGCCgcgCgCCCCCGc -3' miRNA: 3'- gaCCUuaAGG--------------UCGUGCGGa--G-GGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 58890 | 0.67 | 0.768997 |
Target: 5'- -cGGAAccCCcggaGGCGCGCCggCCuCCCCGa -3' miRNA: 3'- gaCCUUaaGG----UCGUGCGGa-GG-GGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 151971 | 0.67 | 0.768997 |
Target: 5'- uUGG-AUUCCGaCcccuCGUCUCCCCCCc -3' miRNA: 3'- gACCuUAAGGUcGu---GCGGAGGGGGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 142523 | 0.67 | 0.768997 |
Target: 5'- cCUGGAcgUCC-GCcCGaCCacaCCCCCCGc -3' miRNA: 3'- -GACCUuaAGGuCGuGC-GGa--GGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 4116 | 0.67 | 0.768997 |
Target: 5'- cCUGGGcgggcucggCCGGgGCGCCg-CCCCCGg -3' miRNA: 3'- -GACCUuaa------GGUCgUGCGGagGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 133 | 0.67 | 0.768066 |
Target: 5'- -cGGAg--CCGGCcgcucccccgcggGCGCCgccccUCCCCCCGc -3' miRNA: 3'- gaCCUuaaGGUCG-------------UGCGG-----AGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 154471 | 0.67 | 0.768066 |
Target: 5'- -cGGAg--CCGGCcgcucccccgcggGCGCCgccccUCCCCCCGc -3' miRNA: 3'- gaCCUuaaGGUCG-------------UGCGG-----AGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 86898 | 0.67 | 0.759629 |
Target: 5'- -gGGAAccCCGGCguggaGCGCCgggCCUCCCGc -3' miRNA: 3'- gaCCUUaaGGUCG-----UGCGGa--GGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 54613 | 0.67 | 0.759629 |
Target: 5'- -cGGGGcgCCccCGCGCCUCCCgCCCc -3' miRNA: 3'- gaCCUUaaGGucGUGCGGAGGG-GGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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