miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5509 5' -58.5 NC_001798.1 + 37615 0.66 0.813876
Target:  5'- uUGGccUUCCuuuGGCGguaaGCUUCCCCCCu -3'
miRNA:   3'- gACCuuAAGG---UCGUg---CGGAGGGGGGu -5'
5509 5' -58.5 NC_001798.1 + 122365 0.66 0.813876
Target:  5'- gUGGGg--CgGGCgacGCGCCcgCCCCCCGc -3'
miRNA:   3'- gACCUuaaGgUCG---UGCGGa-GGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 18607 0.66 0.813876
Target:  5'- -cGGG--UCC-GCGCGCCgUCCCgCCGu -3'
miRNA:   3'- gaCCUuaAGGuCGUGCGG-AGGGgGGU- -5'
5509 5' -58.5 NC_001798.1 + 19216 0.66 0.80519
Target:  5'- gUGGAccccGUUCCccGCAgCGCCUaaucaCCCCCu -3'
miRNA:   3'- gACCU----UAAGGu-CGU-GCGGAg----GGGGGu -5'
5509 5' -58.5 NC_001798.1 + 107576 0.66 0.80519
Target:  5'- uUGGAcgUCuUGGCcgacCGCCUCCUUCCGa -3'
miRNA:   3'- gACCUuaAG-GUCGu---GCGGAGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 29992 0.66 0.80519
Target:  5'- gUGGg---CC-GUGCGCCgCCCCCCGa -3'
miRNA:   3'- gACCuuaaGGuCGUGCGGaGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 27937 0.66 0.80519
Target:  5'- -cGGggUcCCGGCGCcgGCCgCgCCCCGg -3'
miRNA:   3'- gaCCuuAaGGUCGUG--CGGaGgGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 69848 0.66 0.79635
Target:  5'- -cGGGccgccgUCGGC-CGCCcCCCCCCAc -3'
miRNA:   3'- gaCCUuaa---GGUCGuGCGGaGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 24688 0.66 0.79635
Target:  5'- -cGGAGc-CCGGCcCGCCgcgCCCCCg- -3'
miRNA:   3'- gaCCUUaaGGUCGuGCGGa--GGGGGgu -5'
5509 5' -58.5 NC_001798.1 + 23344 0.66 0.79635
Target:  5'- -------gCCGGCGCGCC-CCCCgCCGg -3'
miRNA:   3'- gaccuuaaGGUCGUGCGGaGGGG-GGU- -5'
5509 5' -58.5 NC_001798.1 + 9889 0.66 0.787366
Target:  5'- gUGGAgg-CCAGcCACGCCaaCCCCgGg -3'
miRNA:   3'- gACCUuaaGGUC-GUGCGGagGGGGgU- -5'
5509 5' -58.5 NC_001798.1 + 31550 0.66 0.775484
Target:  5'- -gGGAggUCUgccacagucgucggGGCGCGCCgcgCgCCCCCGc -3'
miRNA:   3'- gaCCUuaAGG--------------UCGUGCGGa--G-GGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 58890 0.67 0.768997
Target:  5'- -cGGAAccCCcggaGGCGCGCCggCCuCCCCGa -3'
miRNA:   3'- gaCCUUaaGG----UCGUGCGGa-GG-GGGGU- -5'
5509 5' -58.5 NC_001798.1 + 151971 0.67 0.768997
Target:  5'- uUGG-AUUCCGaCcccuCGUCUCCCCCCc -3'
miRNA:   3'- gACCuUAAGGUcGu---GCGGAGGGGGGu -5'
5509 5' -58.5 NC_001798.1 + 142523 0.67 0.768997
Target:  5'- cCUGGAcgUCC-GCcCGaCCacaCCCCCCGc -3'
miRNA:   3'- -GACCUuaAGGuCGuGC-GGa--GGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 4116 0.67 0.768997
Target:  5'- cCUGGGcgggcucggCCGGgGCGCCg-CCCCCGg -3'
miRNA:   3'- -GACCUuaa------GGUCgUGCGGagGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 154471 0.67 0.768066
Target:  5'- -cGGAg--CCGGCcgcucccccgcggGCGCCgccccUCCCCCCGc -3'
miRNA:   3'- gaCCUuaaGGUCG-------------UGCGG-----AGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 133 0.67 0.768066
Target:  5'- -cGGAg--CCGGCcgcucccccgcggGCGCCgccccUCCCCCCGc -3'
miRNA:   3'- gaCCUuaaGGUCG-------------UGCGG-----AGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 125263 0.67 0.759629
Target:  5'- -cGGcGUccUCCGGCGCGCaCUCCCgaaaCCGc -3'
miRNA:   3'- gaCCuUA--AGGUCGUGCG-GAGGGg---GGU- -5'
5509 5' -58.5 NC_001798.1 + 86898 0.67 0.759629
Target:  5'- -gGGAAccCCGGCguggaGCGCCgggCCUCCCGc -3'
miRNA:   3'- gaCCUUaaGGUCG-----UGCGGa--GGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.