Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5509 | 5' | -58.5 | NC_001798.1 | + | 154471 | 0.67 | 0.768066 |
Target: 5'- -cGGAg--CCGGCcgcucccccgcggGCGCCgccccUCCCCCCGc -3' miRNA: 3'- gaCCUuaaGGUCG-------------UGCGG-----AGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 153839 | 0.74 | 0.353963 |
Target: 5'- -cGGGGccUCCGGCGC-CUUCCCCCCGc -3' miRNA: 3'- gaCCUUa-AGGUCGUGcGGAGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 151971 | 0.67 | 0.768997 |
Target: 5'- uUGG-AUUCCGaCcccuCGUCUCCCCCCc -3' miRNA: 3'- gACCuUAAGGUcGu---GCGGAGGGGGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 149314 | 0.69 | 0.610806 |
Target: 5'- gUGGAAgUCCAGCGCGCCcaccagggUgCCCUg -3' miRNA: 3'- gACCUUaAGGUCGUGCGGa-------GgGGGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 146602 | 0.67 | 0.721145 |
Target: 5'- -cGGcg--CCAGCggcccACGCCUCCCgCCGc -3' miRNA: 3'- gaCCuuaaGGUCG-----UGCGGAGGGgGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 142523 | 0.67 | 0.768997 |
Target: 5'- cCUGGAcgUCC-GCcCGaCCacaCCCCCCGc -3' miRNA: 3'- -GACCUuaAGGuCGuGC-GGa--GGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 136547 | 0.74 | 0.369728 |
Target: 5'- uUGGAAUUCCAGCA-GCUUCCCaugacgCCGg -3' miRNA: 3'- gACCUUAAGGUCGUgCGGAGGGg-----GGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 135052 | 0.71 | 0.48315 |
Target: 5'- -cGGAGgcggCCGGC-CGCCUCCUgCCCGc -3' miRNA: 3'- gaCCUUaa--GGUCGuGCGGAGGG-GGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 132149 | 0.69 | 0.640135 |
Target: 5'- -cGGGgg-CCGGCgggcgggGCGCC-CCCCCCGg -3' miRNA: 3'- gaCCUuaaGGUCG-------UGCGGaGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 132076 | 0.68 | 0.701418 |
Target: 5'- -cGGAuUUUCGGCGCGCCguugucuguUUCUCCCGc -3' miRNA: 3'- gaCCUuAAGGUCGUGCGG---------AGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 129694 | 0.67 | 0.740572 |
Target: 5'- -gGGGccccaGUaCCGGCGCGCaucggaCCCCCCAu -3' miRNA: 3'- gaCCU-----UAaGGUCGUGCGga----GGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 128291 | 0.67 | 0.740572 |
Target: 5'- uCUGGcg--CCuGaCGCGCCgcgCCCCCCc -3' miRNA: 3'- -GACCuuaaGGuC-GUGCGGa--GGGGGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 126266 | 0.72 | 0.464567 |
Target: 5'- -cGGGcgUCCGG-ACGCCcaagcggccccUCCCCCCGa -3' miRNA: 3'- gaCCUuaAGGUCgUGCGG-----------AGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 125328 | 0.67 | 0.7309 |
Target: 5'- -aGGAAcUCCAGcUugGCCguguggUCgCCCCCAa -3' miRNA: 3'- gaCCUUaAGGUC-GugCGG------AG-GGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 125263 | 0.67 | 0.759629 |
Target: 5'- -cGGcGUccUCCGGCGCGCaCUCCCgaaaCCGc -3' miRNA: 3'- gaCCuUA--AGGUCGUGCG-GAGGGg---GGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 123799 | 0.68 | 0.701418 |
Target: 5'- cCUGGA-----AGC-UGCCUCCCCCCc -3' miRNA: 3'- -GACCUuaaggUCGuGCGGAGGGGGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 123427 | 0.72 | 0.455416 |
Target: 5'- -cGGGucaCCGGgGCGCC-CCCCCCGa -3' miRNA: 3'- gaCCUuaaGGUCgUGCGGaGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 123379 | 0.7 | 0.590644 |
Target: 5'- uCUGGcg-UCCccaGGCgACGCCaggCCCCCCGg -3' miRNA: 3'- -GACCuuaAGG---UCG-UGCGGa--GGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 122734 | 0.72 | 0.473813 |
Target: 5'- cCUGGAGaaCCugauGCGCGCCUCgaggggaccgCCCCCGa -3' miRNA: 3'- -GACCUUaaGGu---CGUGCGGAG----------GGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 122365 | 0.66 | 0.813876 |
Target: 5'- gUGGGg--CgGGCgacGCGCCcgCCCCCCGc -3' miRNA: 3'- gACCUuaaGgUCG---UGCGGa-GGGGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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