Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5509 | 5' | -58.5 | NC_001798.1 | + | 107576 | 0.66 | 0.80519 |
Target: 5'- uUGGAcgUCuUGGCcgacCGCCUCCUUCCGa -3' miRNA: 3'- gACCUuaAG-GUCGu---GCGGAGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 105220 | 0.67 | 0.750151 |
Target: 5'- gCUGccccgUCCgcAGCGC-CCUCCCCCCu -3' miRNA: 3'- -GACcuua-AGG--UCGUGcGGAGGGGGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 90244 | 0.76 | 0.289011 |
Target: 5'- -cGGAAaggCCAGCuCGuCCUCCCCCCc -3' miRNA: 3'- gaCCUUaa-GGUCGuGC-GGAGGGGGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 86898 | 0.67 | 0.759629 |
Target: 5'- -gGGAAccCCGGCguggaGCGCCgggCCUCCCGc -3' miRNA: 3'- gaCCUUaaGGUCG-----UGCGGa--GGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 82316 | 0.71 | 0.531069 |
Target: 5'- -cGGAGgcCCGGUugccCGCCgCCCCCCAc -3' miRNA: 3'- gaCCUUaaGGUCGu---GCGGaGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 77419 | 0.7 | 0.590644 |
Target: 5'- cCUGGuagUCCAgGCGCGCCgggCCUgcgCCCAg -3' miRNA: 3'- -GACCuuaAGGU-CGUGCGGa--GGG---GGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 76258 | 0.74 | 0.353963 |
Target: 5'- -gGGAcgUCgcuCAGCGCGCCgcgcUCCCCCCc -3' miRNA: 3'- gaCCUuaAG---GUCGUGCGG----AGGGGGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 75938 | 0.67 | 0.750151 |
Target: 5'- -cGGggUcgacucggucUCgCAGCGCGCCgggCCCCUg- -3' miRNA: 3'- gaCCuuA----------AG-GUCGUGCGGa--GGGGGgu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 75705 | 0.67 | 0.721145 |
Target: 5'- cCUGGAucUgCAGCugcGCGCCgCCCCgCCGg -3' miRNA: 3'- -GACCUuaAgGUCG---UGCGGaGGGG-GGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 74787 | 0.68 | 0.701418 |
Target: 5'- -cGGG--UCCAccGCACGCCgccccgCCCCCgCAg -3' miRNA: 3'- gaCCUuaAGGU--CGUGCGGa-----GGGGG-GU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 72345 | 0.69 | 0.620914 |
Target: 5'- -aGGAGcucgCCgAGCGCGCCgaCCCCCUg -3' miRNA: 3'- gaCCUUaa--GG-UCGUGCGGa-GGGGGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 72255 | 0.74 | 0.353963 |
Target: 5'- -cGG---UCCAGC-UGCCUCCCCCCc -3' miRNA: 3'- gaCCuuaAGGUCGuGCGGAGGGGGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 69848 | 0.66 | 0.79635 |
Target: 5'- -cGGGccgccgUCGGC-CGCCcCCCCCCAc -3' miRNA: 3'- gaCCUuaa---GGUCGuGCGGaGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 58890 | 0.67 | 0.768997 |
Target: 5'- -cGGAAccCCcggaGGCGCGCCggCCuCCCCGa -3' miRNA: 3'- gaCCUUaaGG----UCGUGCGGa-GG-GGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 57163 | 0.69 | 0.641146 |
Target: 5'- gCUGGcgcccgggCCGGCGC-CCUCCgCCCAg -3' miRNA: 3'- -GACCuuaa----GGUCGUGcGGAGGgGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 54613 | 0.67 | 0.759629 |
Target: 5'- -cGGGGcgCCccCGCGCCUCCCgCCCc -3' miRNA: 3'- gaCCUUaaGGucGUGCGGAGGG-GGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 50414 | 0.69 | 0.641146 |
Target: 5'- -cGGG----CGGCGCGCCccCCCCCCAc -3' miRNA: 3'- gaCCUuaagGUCGUGCGGa-GGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 43332 | 0.69 | 0.63103 |
Target: 5'- uCUGGGGgg-CGGCAgUGCCgCCCCCCGc -3' miRNA: 3'- -GACCUUaagGUCGU-GCGGaGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 37615 | 0.66 | 0.813876 |
Target: 5'- uUGGccUUCCuuuGGCGguaaGCUUCCCCCCu -3' miRNA: 3'- gACCuuAAGG---UCGUg---CGGAGGGGGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 35353 | 0.69 | 0.63103 |
Target: 5'- -------gCUGGCGCGCCcCCCCCCAa -3' miRNA: 3'- gaccuuaaGGUCGUGCGGaGGGGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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