Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5509 | 5' | -58.5 | NC_001798.1 | + | 132076 | 0.68 | 0.701418 |
Target: 5'- -cGGAuUUUCGGCGCGCCguugucuguUUCUCCCGc -3' miRNA: 3'- gaCCUuAAGGUCGUGCGG---------AGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 74787 | 0.68 | 0.701418 |
Target: 5'- -cGGG--UCCAccGCACGCCgccccgCCCCCgCAg -3' miRNA: 3'- gaCCUuaAGGU--CGUGCGGa-----GGGGG-GU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 123799 | 0.68 | 0.701418 |
Target: 5'- cCUGGA-----AGC-UGCCUCCCCCCc -3' miRNA: 3'- -GACCUuaaggUCGuGCGGAGGGGGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 75705 | 0.67 | 0.721145 |
Target: 5'- cCUGGAucUgCAGCugcGCGCCgCCCCgCCGg -3' miRNA: 3'- -GACCUuaAgGUCG---UGCGGaGGGG-GGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 146602 | 0.67 | 0.721145 |
Target: 5'- -cGGcg--CCAGCggcccACGCCUCCCgCCGc -3' miRNA: 3'- gaCCuuaaGGUCG-----UGCGGAGGGgGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 125328 | 0.67 | 0.7309 |
Target: 5'- -aGGAAcUCCAGcUugGCCguguggUCgCCCCCAa -3' miRNA: 3'- gaCCUUaAGGUC-GugCGG------AG-GGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 506 | 0.67 | 0.7309 |
Target: 5'- -gGGGcUUCCccCGCcCCUCCCCCCGc -3' miRNA: 3'- gaCCUuAAGGucGUGcGGAGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 128291 | 0.67 | 0.740572 |
Target: 5'- uCUGGcg--CCuGaCGCGCCgcgCCCCCCc -3' miRNA: 3'- -GACCuuaaGGuC-GUGCGGa--GGGGGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 129694 | 0.67 | 0.740572 |
Target: 5'- -gGGGccccaGUaCCGGCGCGCaucggaCCCCCCAu -3' miRNA: 3'- gaCCU-----UAaGGUCGUGCGga----GGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 105220 | 0.67 | 0.750151 |
Target: 5'- gCUGccccgUCCgcAGCGC-CCUCCCCCCu -3' miRNA: 3'- -GACcuua-AGG--UCGUGcGGAGGGGGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 75938 | 0.67 | 0.750151 |
Target: 5'- -cGGggUcgacucggucUCgCAGCGCGCCgggCCCCUg- -3' miRNA: 3'- gaCCuuA----------AG-GUCGUGCGGa--GGGGGgu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 54613 | 0.67 | 0.759629 |
Target: 5'- -cGGGGcgCCccCGCGCCUCCCgCCCc -3' miRNA: 3'- gaCCUUaaGGucGUGCGGAGGG-GGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 448 | 0.67 | 0.759629 |
Target: 5'- -cGGGGcugcggUCCcgcGGC-CGCCUCCCCCgCGg -3' miRNA: 3'- gaCCUUa-----AGG---UCGuGCGGAGGGGG-GU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 125263 | 0.67 | 0.759629 |
Target: 5'- -cGGcGUccUCCGGCGCGCaCUCCCgaaaCCGc -3' miRNA: 3'- gaCCuUA--AGGUCGUGCG-GAGGGg---GGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 86898 | 0.67 | 0.759629 |
Target: 5'- -gGGAAccCCGGCguggaGCGCCgggCCUCCCGc -3' miRNA: 3'- gaCCUUaaGGUCG-----UGCGGa--GGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 133 | 0.67 | 0.768066 |
Target: 5'- -cGGAg--CCGGCcgcucccccgcggGCGCCgccccUCCCCCCGc -3' miRNA: 3'- gaCCUuaaGGUCG-------------UGCGG-----AGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 154471 | 0.67 | 0.768066 |
Target: 5'- -cGGAg--CCGGCcgcucccccgcggGCGCCgccccUCCCCCCGc -3' miRNA: 3'- gaCCUuaaGGUCG-------------UGCGG-----AGGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 142523 | 0.67 | 0.768997 |
Target: 5'- cCUGGAcgUCC-GCcCGaCCacaCCCCCCGc -3' miRNA: 3'- -GACCUuaAGGuCGuGC-GGa--GGGGGGU- -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 151971 | 0.67 | 0.768997 |
Target: 5'- uUGG-AUUCCGaCcccuCGUCUCCCCCCc -3' miRNA: 3'- gACCuUAAGGUcGu---GCGGAGGGGGGu -5' |
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5509 | 5' | -58.5 | NC_001798.1 | + | 58890 | 0.67 | 0.768997 |
Target: 5'- -cGGAAccCCcggaGGCGCGCCggCCuCCCCGa -3' miRNA: 3'- gaCCUUaaGG----UCGUGCGGa-GG-GGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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