miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5509 5' -58.5 NC_001798.1 + 69848 0.66 0.79635
Target:  5'- -cGGGccgccgUCGGC-CGCCcCCCCCCAc -3'
miRNA:   3'- gaCCUuaa---GGUCGuGCGGaGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 72255 0.74 0.353963
Target:  5'- -cGG---UCCAGC-UGCCUCCCCCCc -3'
miRNA:   3'- gaCCuuaAGGUCGuGCGGAGGGGGGu -5'
5509 5' -58.5 NC_001798.1 + 72345 0.69 0.620914
Target:  5'- -aGGAGcucgCCgAGCGCGCCgaCCCCCUg -3'
miRNA:   3'- gaCCUUaa--GG-UCGUGCGGa-GGGGGGu -5'
5509 5' -58.5 NC_001798.1 + 74787 0.68 0.701418
Target:  5'- -cGGG--UCCAccGCACGCCgccccgCCCCCgCAg -3'
miRNA:   3'- gaCCUuaAGGU--CGUGCGGa-----GGGGG-GU- -5'
5509 5' -58.5 NC_001798.1 + 75705 0.67 0.721145
Target:  5'- cCUGGAucUgCAGCugcGCGCCgCCCCgCCGg -3'
miRNA:   3'- -GACCUuaAgGUCG---UGCGGaGGGG-GGU- -5'
5509 5' -58.5 NC_001798.1 + 75938 0.67 0.750151
Target:  5'- -cGGggUcgacucggucUCgCAGCGCGCCgggCCCCUg- -3'
miRNA:   3'- gaCCuuA----------AG-GUCGUGCGGa--GGGGGgu -5'
5509 5' -58.5 NC_001798.1 + 76258 0.74 0.353963
Target:  5'- -gGGAcgUCgcuCAGCGCGCCgcgcUCCCCCCc -3'
miRNA:   3'- gaCCUuaAG---GUCGUGCGG----AGGGGGGu -5'
5509 5' -58.5 NC_001798.1 + 77419 0.7 0.590644
Target:  5'- cCUGGuagUCCAgGCGCGCCgggCCUgcgCCCAg -3'
miRNA:   3'- -GACCuuaAGGU-CGUGCGGa--GGG---GGGU- -5'
5509 5' -58.5 NC_001798.1 + 82316 0.71 0.531069
Target:  5'- -cGGAGgcCCGGUugccCGCCgCCCCCCAc -3'
miRNA:   3'- gaCCUUaaGGUCGu---GCGGaGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 86898 0.67 0.759629
Target:  5'- -gGGAAccCCGGCguggaGCGCCgggCCUCCCGc -3'
miRNA:   3'- gaCCUUaaGGUCG-----UGCGGa--GGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 90244 0.76 0.289011
Target:  5'- -cGGAAaggCCAGCuCGuCCUCCCCCCc -3'
miRNA:   3'- gaCCUUaa-GGUCGuGC-GGAGGGGGGu -5'
5509 5' -58.5 NC_001798.1 + 105220 0.67 0.750151
Target:  5'- gCUGccccgUCCgcAGCGC-CCUCCCCCCu -3'
miRNA:   3'- -GACcuua-AGG--UCGUGcGGAGGGGGGu -5'
5509 5' -58.5 NC_001798.1 + 107576 0.66 0.80519
Target:  5'- uUGGAcgUCuUGGCcgacCGCCUCCUUCCGa -3'
miRNA:   3'- gACCUuaAG-GUCGu---GCGGAGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 122365 0.66 0.813876
Target:  5'- gUGGGg--CgGGCgacGCGCCcgCCCCCCGc -3'
miRNA:   3'- gACCUuaaGgUCG---UGCGGa-GGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 122734 0.72 0.473813
Target:  5'- cCUGGAGaaCCugauGCGCGCCUCgaggggaccgCCCCCGa -3'
miRNA:   3'- -GACCUUaaGGu---CGUGCGGAG----------GGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 123379 0.7 0.590644
Target:  5'- uCUGGcg-UCCccaGGCgACGCCaggCCCCCCGg -3'
miRNA:   3'- -GACCuuaAGG---UCG-UGCGGa--GGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 123427 0.72 0.455416
Target:  5'- -cGGGucaCCGGgGCGCC-CCCCCCGa -3'
miRNA:   3'- gaCCUuaaGGUCgUGCGGaGGGGGGU- -5'
5509 5' -58.5 NC_001798.1 + 123799 0.68 0.701418
Target:  5'- cCUGGA-----AGC-UGCCUCCCCCCc -3'
miRNA:   3'- -GACCUuaaggUCGuGCGGAGGGGGGu -5'
5509 5' -58.5 NC_001798.1 + 125263 0.67 0.759629
Target:  5'- -cGGcGUccUCCGGCGCGCaCUCCCgaaaCCGc -3'
miRNA:   3'- gaCCuUA--AGGUCGUGCG-GAGGGg---GGU- -5'
5509 5' -58.5 NC_001798.1 + 125328 0.67 0.7309
Target:  5'- -aGGAAcUCCAGcUugGCCguguggUCgCCCCCAa -3'
miRNA:   3'- gaCCUUaAGGUC-GugCGG------AG-GGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.