Results 1 - 20 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 145462 | 0.66 | 0.447336 |
Target: 5'- -cCCGGCcGCCGcgcgcCCCCGCC-CGGC-Cg -3' miRNA: 3'- caGGCCGcCGGU-----GGGGCGGcGUCGaG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 145420 | 0.66 | 0.447336 |
Target: 5'- -cCCGGCcGCCGcgcgcCCCCGCC-CGGC-Cg -3' miRNA: 3'- caGGCCGcCGGU-----GGGGCGGcGUCGaG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 47243 | 0.66 | 0.447336 |
Target: 5'- cGUUgGGCGGCC-CCCgGCCuuuGCUUc -3' miRNA: 3'- -CAGgCCGCCGGuGGGgCGGcguCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 67328 | 0.66 | 0.447336 |
Target: 5'- --gCGGUucGGCCAuCCCCGCCgGCuGCg- -3' miRNA: 3'- cagGCCG--CCGGU-GGGGCGG-CGuCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 145504 | 0.66 | 0.447336 |
Target: 5'- -cCCGGCcGCCGcgcgcCCCCGCC-CGGC-Cg -3' miRNA: 3'- caGGCCGcCGGU-----GGGGCGGcGUCGaG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 98268 | 0.66 | 0.438819 |
Target: 5'- gGUgCGGgGagcuugaguugcGCCGCCCCGaCUGCAGC-Cg -3' miRNA: 3'- -CAgGCCgC------------CGGUGGGGC-GGCGUCGaG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 3897 | 0.66 | 0.438819 |
Target: 5'- -gCgGGgGGCCgGCCCCggGCCaCGGCUCc -3' miRNA: 3'- caGgCCgCCGG-UGGGG--CGGcGUCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 34796 | 0.66 | 0.438819 |
Target: 5'- -gCCGGCgcGGCCcgggGCCCCGgggcccCCGC-GCUCc -3' miRNA: 3'- caGGCCG--CCGG----UGGGGC------GGCGuCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 103316 | 0.66 | 0.438819 |
Target: 5'- -gCUGGCGGCCGUCUCGaggaCGC-GCUCc -3' miRNA: 3'- caGGCCGCCGGUGGGGCg---GCGuCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 105405 | 0.66 | 0.438819 |
Target: 5'- cUCCaG-GGCCGCCgCgGCCGCGGUg- -3' miRNA: 3'- cAGGcCgCCGGUGG-GgCGGCGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 132124 | 0.66 | 0.438819 |
Target: 5'- gGUCCugcaGGCGGCCcuGCgCCGCCGggggcCGGCg- -3' miRNA: 3'- -CAGG----CCGCCGG--UGgGGCGGC-----GUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 131 | 0.66 | 0.438819 |
Target: 5'- -cCCGGagcCGGCCGCUCCcCCGCgGGCg- -3' miRNA: 3'- caGGCC---GCCGGUGGGGcGGCG-UCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 117546 | 0.66 | 0.438819 |
Target: 5'- -cCCGGUcuuuGGCUgcGCCCagguGCCGCGGCg- -3' miRNA: 3'- caGGCCG----CCGG--UGGGg---CGGCGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 154469 | 0.66 | 0.438819 |
Target: 5'- -cCCGGagcCGGCCGCUCCcCCGCgGGCg- -3' miRNA: 3'- caGGCC---GCCGGUGGGGcGGCG-UCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 502 | 0.66 | 0.433753 |
Target: 5'- -cCCGGgGGCUucCCCCGCCccuccccccgcgcccGCGGCc- -3' miRNA: 3'- caGGCCgCCGGu-GGGGCGG---------------CGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 84604 | 0.66 | 0.430395 |
Target: 5'- -cCCGGU-GCCgguGCCCCGCCGaAGCg- -3' miRNA: 3'- caGGCCGcCGG---UGGGGCGGCgUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 153057 | 0.66 | 0.430395 |
Target: 5'- -gCCGGC-GCCGCCCC-CUGgGGCg- -3' miRNA: 3'- caGGCCGcCGGUGGGGcGGCgUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 149474 | 0.66 | 0.430395 |
Target: 5'- --gCGGgGGCCGCggCCCGCaGCAGgUCc -3' miRNA: 3'- cagGCCgCCGGUG--GGGCGgCGUCgAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 114829 | 0.66 | 0.430395 |
Target: 5'- cGUCC-GUGGCCguGCCCCGCCugacGCAcGC-Cg -3' miRNA: 3'- -CAGGcCGCCGG--UGGGGCGG----CGU-CGaG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 3964 | 0.66 | 0.430395 |
Target: 5'- -gCCGGaGGCCGCgUCGgCGUccAGCUCg -3' miRNA: 3'- caGGCCgCCGGUGgGGCgGCG--UCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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