miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 145504 0.66 0.447336
Target:  5'- -cCCGGCcGCCGcgcgcCCCCGCC-CGGC-Cg -3'
miRNA:   3'- caGGCCGcCGGU-----GGGGCGGcGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 145462 0.66 0.447336
Target:  5'- -cCCGGCcGCCGcgcgcCCCCGCC-CGGC-Cg -3'
miRNA:   3'- caGGCCGcCGGU-----GGGGCGGcGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 145420 0.66 0.447336
Target:  5'- -cCCGGCcGCCGcgcgcCCCCGCC-CGGC-Cg -3'
miRNA:   3'- caGGCCGcCGGU-----GGGGCGGcGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 47243 0.66 0.447336
Target:  5'- cGUUgGGCGGCC-CCCgGCCuuuGCUUc -3'
miRNA:   3'- -CAGgCCGCCGGuGGGgCGGcguCGAG- -5'
5510 3' -66.6 NC_001798.1 + 67328 0.66 0.447336
Target:  5'- --gCGGUucGGCCAuCCCCGCCgGCuGCg- -3'
miRNA:   3'- cagGCCG--CCGGU-GGGGCGG-CGuCGag -5'
5510 3' -66.6 NC_001798.1 + 3897 0.66 0.438819
Target:  5'- -gCgGGgGGCCgGCCCCggGCCaCGGCUCc -3'
miRNA:   3'- caGgCCgCCGG-UGGGG--CGGcGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 34796 0.66 0.438819
Target:  5'- -gCCGGCgcGGCCcgggGCCCCGgggcccCCGC-GCUCc -3'
miRNA:   3'- caGGCCG--CCGG----UGGGGC------GGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 103316 0.66 0.438819
Target:  5'- -gCUGGCGGCCGUCUCGaggaCGC-GCUCc -3'
miRNA:   3'- caGGCCGCCGGUGGGGCg---GCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 98268 0.66 0.438819
Target:  5'- gGUgCGGgGagcuugaguugcGCCGCCCCGaCUGCAGC-Cg -3'
miRNA:   3'- -CAgGCCgC------------CGGUGGGGC-GGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 105405 0.66 0.438819
Target:  5'- cUCCaG-GGCCGCCgCgGCCGCGGUg- -3'
miRNA:   3'- cAGGcCgCCGGUGG-GgCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 132124 0.66 0.438819
Target:  5'- gGUCCugcaGGCGGCCcuGCgCCGCCGggggcCGGCg- -3'
miRNA:   3'- -CAGG----CCGCCGG--UGgGGCGGC-----GUCGag -5'
5510 3' -66.6 NC_001798.1 + 131 0.66 0.438819
Target:  5'- -cCCGGagcCGGCCGCUCCcCCGCgGGCg- -3'
miRNA:   3'- caGGCC---GCCGGUGGGGcGGCG-UCGag -5'
5510 3' -66.6 NC_001798.1 + 117546 0.66 0.438819
Target:  5'- -cCCGGUcuuuGGCUgcGCCCagguGCCGCGGCg- -3'
miRNA:   3'- caGGCCG----CCGG--UGGGg---CGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 154469 0.66 0.438819
Target:  5'- -cCCGGagcCGGCCGCUCCcCCGCgGGCg- -3'
miRNA:   3'- caGGCC---GCCGGUGGGGcGGCG-UCGag -5'
5510 3' -66.6 NC_001798.1 + 502 0.66 0.433753
Target:  5'- -cCCGGgGGCUucCCCCGCCccuccccccgcgcccGCGGCc- -3'
miRNA:   3'- caGGCCgCCGGu-GGGGCGG---------------CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 3964 0.66 0.430395
Target:  5'- -gCCGGaGGCCGCgUCGgCGUccAGCUCg -3'
miRNA:   3'- caGGCCgCCGGUGgGGCgGCG--UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 114829 0.66 0.430395
Target:  5'- cGUCC-GUGGCCguGCCCCGCCugacGCAcGC-Cg -3'
miRNA:   3'- -CAGGcCGCCGG--UGGGGCGG----CGU-CGaG- -5'
5510 3' -66.6 NC_001798.1 + 149474 0.66 0.430395
Target:  5'- --gCGGgGGCCGCggCCCGCaGCAGgUCc -3'
miRNA:   3'- cagGCCgCCGGUG--GGGCGgCGUCgAG- -5'
5510 3' -66.6 NC_001798.1 + 153057 0.66 0.430395
Target:  5'- -gCCGGC-GCCGCCCC-CUGgGGCg- -3'
miRNA:   3'- caGGCCGcCGGUGGGGcGGCgUCGag -5'
5510 3' -66.6 NC_001798.1 + 84604 0.66 0.430395
Target:  5'- -cCCGGU-GCCgguGCCCCGCCGaAGCg- -3'
miRNA:   3'- caGGCCGcCGG---UGGGGCGGCgUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.