miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 5' -55.5 NC_001798.1 + 154426 0.69 0.794791
Target:  5'- -cGGGcggCAgGGCAGCCCCGCg--CGCc -3'
miRNA:   3'- caCUCa--GUgCCGUUGGGGUGgaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 153685 0.72 0.657781
Target:  5'- -gGGGaCGCGGgGGCCgCCGCCggCGCa -3'
miRNA:   3'- caCUCaGUGCCgUUGG-GGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 153399 0.68 0.846156
Target:  5'- --cGGUCGCGGUcGgCCCGCUcgCGCg -3'
miRNA:   3'- cacUCAGUGCCGuUgGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 152633 0.76 0.405328
Target:  5'- -gGAGUCccccCGGC-GCCCCGCCggCGCg -3'
miRNA:   3'- caCUCAGu---GCCGuUGGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 151692 0.67 0.867082
Target:  5'- gGUGGGUCGCGGUgaaggucgucgucaGAgauUCCCACC-UCGg -3'
miRNA:   3'- -CACUCAGUGCCG--------------UU---GGGGUGGaAGCg -5'
5510 5' -55.5 NC_001798.1 + 150858 0.66 0.926814
Target:  5'- -cGGGUCGCGGCGGgcugggaggUUCCGCgggUCGCc -3'
miRNA:   3'- caCUCAGUGCCGUU---------GGGGUGga-AGCG- -5'
5510 5' -55.5 NC_001798.1 + 149668 0.7 0.76701
Target:  5'- -cGGGUCGCGG--GCCCCgggcucggggccGCCcUCGCg -3'
miRNA:   3'- caCUCAGUGCCguUGGGG------------UGGaAGCG- -5'
5510 5' -55.5 NC_001798.1 + 149456 0.66 0.932024
Target:  5'- -aGGGU-GCGGCGGCUCCACgCgggggcCGCg -3'
miRNA:   3'- caCUCAgUGCCGUUGGGGUG-Gaa----GCG- -5'
5510 5' -55.5 NC_001798.1 + 146595 0.68 0.846156
Target:  5'- -cGGGcCGCGGCGccagcgGCCCaCGCCUccCGCc -3'
miRNA:   3'- caCUCaGUGCCGU------UGGG-GUGGAa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 143110 0.69 0.785666
Target:  5'- uGUGcGUUGCGGCGguGCUCCGCgCUUgCGCu -3'
miRNA:   3'- -CACuCAGUGCCGU--UGGGGUG-GAA-GCG- -5'
5510 5' -55.5 NC_001798.1 + 139703 0.69 0.785666
Target:  5'- cGUG-GUCACGG--GCgCCACCgaaUCGCg -3'
miRNA:   3'- -CACuCAGUGCCguUGgGGUGGa--AGCG- -5'
5510 5' -55.5 NC_001798.1 + 138699 0.66 0.920805
Target:  5'- -gGAGUCgaacgcgACGGCcagaucagaAGCCCCggGCCggCGCg -3'
miRNA:   3'- caCUCAG-------UGCCG---------UUGGGG--UGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 134680 0.68 0.838038
Target:  5'- -cGGGUCACGGCGcggguGCUgCugCcgCGCg -3'
miRNA:   3'- caCUCAGUGCCGU-----UGGgGugGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 129676 0.66 0.926814
Target:  5'- cGUG-GUCACccgGGCGccgggGCCCCaguACCggCGCg -3'
miRNA:   3'- -CACuCAGUG---CCGU-----UGGGG---UGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 129162 0.7 0.757497
Target:  5'- cUGGuUCGCcGCGAgCCCAUCUUCGCc -3'
miRNA:   3'- cACUcAGUGcCGUUgGGGUGGAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 127663 0.67 0.897183
Target:  5'- ---uGUCACGcCAACCCgGCCgcgCGCc -3'
miRNA:   3'- cacuCAGUGCcGUUGGGgUGGaa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 123427 0.69 0.821248
Target:  5'- -cGGGUCACcggGGCGcCCCCcCCgaCGCg -3'
miRNA:   3'- caCUCAGUG---CCGUuGGGGuGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 121698 0.68 0.838038
Target:  5'- -gGGGcCGCGGC--UCCCGCCgcCGCg -3'
miRNA:   3'- caCUCaGUGCCGuuGGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 121537 0.66 0.915674
Target:  5'- --cGGUCGCGGC-GCUgCGCCUggCGUg -3'
miRNA:   3'- cacUCAGUGCCGuUGGgGUGGAa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 121197 0.72 0.647551
Target:  5'- -cGGGaCcCGaGCAGCCCCGCCU-CGCu -3'
miRNA:   3'- caCUCaGuGC-CGUUGGGGUGGAaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.