miRNA display CGI


Results 21 - 40 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 5' -55.5 NC_001798.1 + 120836 0.66 0.932024
Target:  5'- uUGAGcagcUCGuCGGCGGCCCCGCggaggUUGUa -3'
miRNA:   3'- cACUC----AGU-GCCGUUGGGGUGga---AGCG- -5'
5510 5' -55.5 NC_001798.1 + 115786 0.68 0.846156
Target:  5'- cGUG-GUCAaCGGCAACCugCC-CCUggCGCu -3'
miRNA:   3'- -CACuCAGU-GCCGUUGG--GGuGGAa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 113653 0.71 0.698412
Target:  5'- uGUGGGUgGCGGCGGCggaCugCUUUGCc -3'
miRNA:   3'- -CACUCAgUGCCGUUGgg-GugGAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 109773 0.67 0.879473
Target:  5'- -cGAcGUCgcGCGGCGACCCaCGCCgaucuccgggccgCGCu -3'
miRNA:   3'- caCU-CAG--UGCCGUUGGG-GUGGaa-----------GCG- -5'
5510 5' -55.5 NC_001798.1 + 107432 0.69 0.785666
Target:  5'- -gGGGUCgccGCGGCGACCCCGCgCccCGa -3'
miRNA:   3'- caCUCAG---UGCCGUUGGGGUG-GaaGCg -5'
5510 5' -55.5 NC_001798.1 + 106468 0.69 0.81259
Target:  5'- aUGcAGUCugGGCGGCgcggCCCGagguccaCUUCGCa -3'
miRNA:   3'- cAC-UCAGugCCGUUG----GGGUg------GAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 106091 0.73 0.596374
Target:  5'- --cGGUCGCGGCGACCCggCGCCgcgacCGCc -3'
miRNA:   3'- cacUCAGUGCCGUUGGG--GUGGaa---GCG- -5'
5510 5' -55.5 NC_001798.1 + 105207 0.68 0.8618
Target:  5'- gGUGGGcgACGGCGcuGCCCCGuCCgcagCGCc -3'
miRNA:   3'- -CACUCagUGCCGU--UGGGGU-GGaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 103385 0.66 0.90914
Target:  5'- -aGGGUCguugaccACGGCGagcACCCgGCCcaccUCGCa -3'
miRNA:   3'- caCUCAG-------UGCCGU---UGGGgUGGa---AGCG- -5'
5510 5' -55.5 NC_001798.1 + 103030 0.67 0.869314
Target:  5'- -cGAGcUCGgccuCGGCGGCCUCGCg-UCGCa -3'
miRNA:   3'- caCUC-AGU----GCCGUUGGGGUGgaAGCG- -5'
5510 5' -55.5 NC_001798.1 + 102887 0.72 0.616818
Target:  5'- cGUGuGUC-CGGCGAUCCCgGCCUgcCGCc -3'
miRNA:   3'- -CACuCAGuGCCGUUGGGG-UGGAa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 102391 0.72 0.647551
Target:  5'- --cGGUCgGCGGCGAuggcCCCCACCagCGCg -3'
miRNA:   3'- cacUCAG-UGCCGUU----GGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 100882 0.69 0.803768
Target:  5'- --uGGUCGCGGCcuuCUUCGCCUUcCGCu -3'
miRNA:   3'- cacUCAGUGCCGuu-GGGGUGGAA-GCG- -5'
5510 5' -55.5 NC_001798.1 + 100495 0.66 0.926814
Target:  5'- cUGAGUCGCGcCGACgucaCCACCgUCaGCa -3'
miRNA:   3'- cACUCAGUGCcGUUGg---GGUGGaAG-CG- -5'
5510 5' -55.5 NC_001798.1 + 100422 0.67 0.890553
Target:  5'- cGUGGGcCAcCGGCGcuACUUCAUCUUCGg -3'
miRNA:   3'- -CACUCaGU-GCCGU--UGGGGUGGAAGCg -5'
5510 5' -55.5 NC_001798.1 + 98644 0.66 0.920805
Target:  5'- -cGAccGUCGCGGCGAacgggggUCCCGCCUcccggcCGCc -3'
miRNA:   3'- caCU--CAGUGCCGUU-------GGGGUGGAa-----GCG- -5'
5510 5' -55.5 NC_001798.1 + 97758 0.68 0.836392
Target:  5'- -cGGGUCagcguccACGGCGaggugcuGCCCgCgACCUUCGCc -3'
miRNA:   3'- caCUCAG-------UGCCGU-------UGGG-G-UGGAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 93025 0.66 0.915674
Target:  5'- -cGAGggCGCGGCccuCCCCGCCgacauuaCGUu -3'
miRNA:   3'- caCUCa-GUGCCGuu-GGGGUGGaa-----GCG- -5'
5510 5' -55.5 NC_001798.1 + 92497 0.7 0.728329
Target:  5'- ----uUCACGGCGGCCgCCACCUg-GCc -3'
miRNA:   3'- cacucAGUGCCGUUGG-GGUGGAagCG- -5'
5510 5' -55.5 NC_001798.1 + 90727 0.66 0.909746
Target:  5'- -cGGGgCACGGCAcugcagguGCCgauCCACCUcCGCc -3'
miRNA:   3'- caCUCaGUGCCGU--------UGG---GGUGGAaGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.