Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 27938 | 0.66 | 0.932024 |
Target: 5'- -gGGGUCcCGGCGccgGCCgCGCCccggCGCu -3' miRNA: 3'- caCUCAGuGCCGU---UGGgGUGGaa--GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 150858 | 0.66 | 0.926814 |
Target: 5'- -cGGGUCGCGGCGGgcugggaggUUCCGCgggUCGCc -3' miRNA: 3'- caCUCAGUGCCGUU---------GGGGUGga-AGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 100495 | 0.66 | 0.926814 |
Target: 5'- cUGAGUCGCGcCGACgucaCCACCgUCaGCa -3' miRNA: 3'- cACUCAGUGCcGUUGg---GGUGGaAG-CG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 30814 | 0.66 | 0.926814 |
Target: 5'- -cGGGcaaccCGCGGaCGGCCCCGCgCUcccugUCGCu -3' miRNA: 3'- caCUCa----GUGCC-GUUGGGGUG-GA-----AGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 4340 | 0.66 | 0.926814 |
Target: 5'- aUGAGUCAgaGGCGGCCgagCGCCggcggggggCGCg -3' miRNA: 3'- cACUCAGUg-CCGUUGGg--GUGGaa-------GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 85365 | 0.66 | 0.921363 |
Target: 5'- ---cGcCGCGGCGuCCgucgaCACCUUCGCg -3' miRNA: 3'- cacuCaGUGCCGUuGGg----GUGGAAGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 51908 | 0.66 | 0.923572 |
Target: 5'- -cGAGccUCACGGCGuugcggcccguggggGCCgCCGCCgugcCGCu -3' miRNA: 3'- caCUC--AGUGCCGU---------------UGG-GGUGGaa--GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 52248 | 0.66 | 0.925204 |
Target: 5'- cGUGGGggCGCGccuGCAcccgcacuccgcccACCCCGCgUUUGCg -3' miRNA: 3'- -CACUCa-GUGC---CGU--------------UGGGGUGgAAGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 29605 | 0.66 | 0.926279 |
Target: 5'- -cGGGUauaaGGCAGCCCCgugugacggucggGCCgcaUUCGCa -3' miRNA: 3'- caCUCAgug-CCGUUGGGG-------------UGG---AAGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 58930 | 0.66 | 0.926814 |
Target: 5'- -aGGGcCACGGCcgcucCCCCGCCgaccaGCc -3' miRNA: 3'- caCUCaGUGCCGuu---GGGGUGGaag--CG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 129676 | 0.66 | 0.926814 |
Target: 5'- cGUG-GUCACccgGGCGccgggGCCCCaguACCggCGCg -3' miRNA: 3'- -CACuCAGUG---CCGU-----UGGGG---UGGaaGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 60319 | 0.67 | 0.889877 |
Target: 5'- gGUGGGUUugGCGGUcucguCCCCgacggcguucaccACCUUCGUg -3' miRNA: 3'- -CACUCAG--UGCCGuu---GGGG-------------UGGAAGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 100422 | 0.67 | 0.890553 |
Target: 5'- cGUGGGcCAcCGGCGcuACUUCAUCUUCGg -3' miRNA: 3'- -CACUCaGU-GCCGU--UGGGGUGGAAGCg -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 25899 | 0.67 | 0.897183 |
Target: 5'- cGUGGucUCGCGGCAGCacgCCUACCUggccUGCg -3' miRNA: 3'- -CACUc-AGUGCCGUUG---GGGUGGAa---GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 43333 | 0.67 | 0.897183 |
Target: 5'- cUGGGggGCGGCAgugccGCCCC-CCgcgUCGUc -3' miRNA: 3'- cACUCagUGCCGU-----UGGGGuGGa--AGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 127663 | 0.67 | 0.897183 |
Target: 5'- ---uGUCACGcCAACCCgGCCgcgCGCc -3' miRNA: 3'- cacuCAGUGCcGUUGGGgUGGaa-GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 39684 | 0.67 | 0.897183 |
Target: 5'- ------gGCGGCGACCUCGCCgccCGCc -3' miRNA: 3'- cacucagUGCCGUUGGGGUGGaa-GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 39814 | 0.67 | 0.901686 |
Target: 5'- gGUG-GUCGCGGguGgcggaucgucggcuCCCCGCCg-CGCu -3' miRNA: 3'- -CACuCAGUGCCguU--------------GGGGUGGaaGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 81094 | 0.67 | 0.903582 |
Target: 5'- -gGGGacguucUCGCGGCGAgCgCCGCCgaCGCg -3' miRNA: 3'- caCUC------AGUGCCGUUgG-GGUGGaaGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 3504 | 0.67 | 0.883695 |
Target: 5'- --uGGcCACGGCGGCCgCCACgUgCGCc -3' miRNA: 3'- cacUCaGUGCCGUUGG-GGUGgAaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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